Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1519 ATGGTCGTTAGCGGTGGGAAGCCATTGAAGCGGATGAAGAGGAGAGTCACTGCTGATTTCTATGATTTTCTCACGTTTCCGTCCCCTGCAGTCGCTGGAGAAGATTTCTCCGGCGGAGCATTCCGGACAAACGTGAGATCTTTCCTGTCGAAGCACGCGCTGCTTCCACCGCCTTCGGCTTTGTTCCCTCACCTGCTGACGTGGCAGATCCTGTTCCGAGTCGGTGACTTGACGGACGGCCTGGAATCGAGCCCAGCGGTGGTCTGCCTTGACGTTGTCGAAGAGGATGTGGCCAGATCTAGATCCGTCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTGTGCGCAAAACGTTACCATTTTATAATCAAGGCTGATGGTACTTCCATTGGCGGGTACCACAAGCCATGTATGTGCTGTGGAGACATCTTGCACTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGACAACCACGGATGATGTTGAAGACTGGGTCTATCACCAATTAGAAAGCACAACTCATCTTTTGCATGGGGTAGTCCATGCTAACGGTCATGGGCACCTACTTCGAGTTAATGGTAGAGAAGGTGGTTCCAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCAAAGAAGTTTGGGGTGGAGTACCGTCTACTCAATGCTATTACGAAAGGACATCCTTGGTATGGTGATTGGGGTTATCAGTTTGGTTCTGGTAGCTACGGTCTTACCCATGAATCATATAAGTCTGCTGTTGAATTCCTGTCCAATCTGCCCTTGTCCACCTTTCTTGCCCAAGGGCAGAAATGTGACTCACGTGTACAAGGCATGATCTCATATTACCAGTCTTTGTCAAAGAAAGAGCTTGTAAATATAAGGGGCTTCTTGTGTTTTTTAATGGATTTGATTCATGATGCTCGTAAGACTGCTGCATCAAATATTGATGACATCACCTGCAAGAAGCGACGCCTGAATGTTACTGGAGTGTCTTCTTCATGGACTAAGAGTGACATTGAATGTGTGGAGGAAGCCATGTTGAGAGTGCTTCGAGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGAGCTCTAAGGGGTGCTGTCTGCAAGGTGGCCTCCCCGGAGCTGCTTGATTACTGTCTTGGAGAATTGGGAGGAAAAGTGGTCCTTGGTGCAACAGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGACTAGAGGCGGGGGACAATTCTCGCTATGGATTTGCAACCAATATTTCTTCGGGCTTAAAGAATCCATCTGAAGTGACTCTTCTACACGACCTGAGATACTTTTATAATTCCATTCTTAATCCTCAGACGATGTTGAACTATGATCCAGAGGAGACAAGGGTAATTGCCATGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTCAAGGACTATAAACCCGAGATGATGCCGCTGTCAAACCTGTCTAAGATACGCCTCTCATGTCAATTAGAGCTAGAAGATGAATCTGATGATTTTGCTGCTCACCTCCCACCAGAGTTAGTGATCCTCCCTGGAAATGCCACCGTAGCTGACCTCAAGGTTGAAGCAGCAAATGCTTTCCAAGATGTTTATGTCATGTTCAGAAGACTTCAAATCGAGGAGCTTCTTGGCTATAGTGTTGAGGATTCCTCCTTGGTCCAGCAATTGTCAGGTTCCATGATCCAAGCAGTCCGGCTGCGAGGAAGATGCAACGGCAAGAATGGGTTGAGCAAATTCCAAATGGAACGGGGCATCGAGAGGTGGACCGTGGAATGCAGCTGCGGGGCCAAGGACGACGATGGAGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGACACACAAGGTGTTCTGGCATTCACGATGCAGATCCCGTGCCCGCACAGTTTGTTTGTCCAAGATGCCAGAACTCTGACCCCAAGCCCAAATCTAATGGACCCTGCGAGGATGAGATTGTGATTGATATTGCCAAGAATTGCTTTGAGAACAGCTTGCTAGTGCCATCTGATGTTCGTTGA 2124 0.4812 MVVSGGKPLKRMKRRVTADFYDFLTFPSPAVAGEDFSGGAFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGLESSPAVVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCAKRYHFIIKADGTSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGHGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKFGVEYRLLNAITKGHPWYGDWGYQFGSGSYGLTHESYKSAVEFLSNLPLSTFLAQGQKCDSRVQGMISYYQSLSKKELVNIRGFLCFLMDLIHDARKTAASNIDDITCKKRRLNVTGVSSSWTKSDIECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGATVNTRCNPVTGAFEYRLEAGDNSRYGFATNISSGLKNPSEVTLLHDLRYFYNSILNPQTMLNYDPEETRVIAMSSAQKLLDCKQFVKDYKPEMMPLSNLSKIRLSCQLELEDESDDFAAHLPPELVILPGNATVADLKVEAANAFQDVYVMFRRLQIEELLGYSVEDSSLVQQLSGSMIQAVRLRGRCNGKNGLSKFQMERGIERWTVECSCGAKDDDGERMLACDICGVWRHTRCSGIHDADPVPAQFVCPRCQNSDPKPKSNGPCEDEIVIDIAKNCFENSLLVPSDVR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1519 707 ProSiteProfiles Zinc finger PHD-type profile. 623 673 IPR019787 -
Prci1g1519 707 SMART PHD_3 625 671 IPR001965 -
Prci1g1519 707 SUPERFAMILY FYVE/PHD zinc finger 615 674 IPR011011 -
Prci1g1519 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 681 - -
Prci1g1519 707 CDD PHD_MMD1_like 625 670 - -
Prci1g1519 707 Pfam PHD-finger 626 672 IPR019787 -
Prci1g1519 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 676 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1519 Prci-Chr1 34255877 34261317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1519 84 670 PHD Transcription Factor Family AT5G22260 30.288 3.99e-85 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g1519 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1519 K26271 - gmx:100818189 1072