Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1517 ATGCCTGCCATGAAGAAGAATTCTGAGCAGAGTCGGTTAGGTCTTGTATTCAACAAGTTGATGAATGAGATGGGAGATCCTGTTGATTTTGAACTTCCAGATTGGTTTAGTAAGTGGAAGGCAGTGCCATACGTCTCTATAAAGCGCAATATATATGTTGCAAAGAAGGTAAAGAGAAGACTTGATGATGATGGCATATTCTGTTCCTGTACTCCCTCCCCTGGGTCTTCTAGTGTTTGTGGTAAATATTGCCATTGTGGGATGCTTATGTCTAGCTGCTCTTCAGGCTGTAAATGTGGGAGTTCTTGTCTCAATAAACCATTTCAGAATCGGCCTACAAAAAAGATGAAATTGGTTCAGACCGAGAAATGTGGCTCTGGAATTGTGGCGGATGAAGATATCAAGCAAGGGGACTTTGTCATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAACAAAGGCTTTGGAATATGAAACATCGGGGGGAGACAAACTTCTACTTGTGTGAAATTAACCGAGATATGGTGATCGATGCAACATATAAGGGGAACAAATCAAGATATATAAATCATAGTTGCTGCCCCAATACGGAGATGCAGAAATGGATAATTGATGGCGAAACAAGAATTGGCATATTTGCAACACGTGACATAAGGAAGGGCGAGCATCTTACTTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGAGTGCAGGCGTAAGTTGGGGGTCCGACCTACAAAGCCTAAGACATTGTCAGATGCTGCACTAAAATTAGTCGCATATCAGGTTTATCAGAATGGAGGCTTGCATATTGGACATTCTCATGCTATCGGTGTACCAAAGAACTCACACAATTGCATTGGAGAAATTATTAGGATAAATCACCCCACGGATGAGAGGTGTTTTGGGATTATAAAGCGGTTCGATAAATATTCCAAAAAACACACTATTATGTTTGAAGATGGTGATGTTGAATTTATCGACTTGTCAGAAGTAGATTGGGAACTTGTGAGATTATGA 1053 0.4046 MPAMKKNSEQSRLGLVFNKLMNEMGDPVDFELPDWFSKWKAVPYVSIKRNIYVAKKVKRRLDDDGIFCSCTPSPGSSSVCGKYCHCGMLMSSCSSGCKCGSSCLNKPFQNRPTKKMKLVQTEKCGSGIVADEDIKQGDFVIEYVGEVIDDKTCEQRLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKPKTLSDAALKLVAYQVYQNGGLHIGHSHAIGVPKNSHNCIGEIIRINHPTDERCFGIIKRFDKYSKKHTIMFEDGDVEFIDLSEVDWELVRL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1517 350 SMART set_7 114 237 IPR001214 GO:0005515
Prci1g1517 350 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0042054
Prci1g1517 350 SUPERFAMILY SET domain 39 249 IPR046341 -
Prci1g1517 350 FunFam Histone-lysine N-methyltransferase 30 269 - -
Prci1g1517 350 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Prci1g1517 350 Gene3D SET domain 35 268 IPR046341 -
Prci1g1517 350 SMART PostSET_3 237 253 IPR003616 -
Prci1g1517 350 Pfam SET domain 125 230 IPR001214 GO:0005515
Prci1g1517 350 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 294 IPR025787 -
Prci1g1517 350 PANTHER SET DOMAIN PROTEINS 29 273 - -
Prci1g1517 350 CDD SET_ASHR3-like 115 253 - -
Prci1g1517 350 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0042054
Prci1g1517 350 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1517 Prci-Chr1 34247410 34254049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1517 87 249 C2H2 Transcription Factor Family AT2G23740 34.973 9.19e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci1g1517 SET 6.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1517 - - jre:109005024 607.446