Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1489 ATGGAAGAAAAAGATAGTTTTTTCGCTGGGCTCACCGTGAAGGCTAACGATGCTCCGGAGAGCCACCATGTAACTCCGAGAAGTGAAAACTTCGGACTGTTCGGCGGGCATACAGGGACGGCGCCGGCCCCGGCGCCTGCACCAGCTCCGACTACGGCTCCAATTCCATCTCCAGCTTCAGCTCCAGTGCCTTCTTCAGTTTCGGCGCCGGAGCCAGTCAGTGTGGCGGCGGCGCCAGCGAGTACGGATGTAGTAAAGAAGAAAAGGGGAAGGCCTAGGAAGTACGGGCCTGATGGCAAATTAGCGTTGGCGTTGTCGCCGATGCCAATTTCATCTTCTATTCCGTTGACTGGTGACTTCTCACTGTGGAAACGTGGTAGAGGGCGGCCAGTTGAATCGGTCAAGAAGTCGTTTAAGTACGAATTTGAAAGTCCAGGACCAGGTGATGGCATTGCATACTCAGTTGGTGCCAATTTCACACCCCACGTGCTTACTGTTAATGCTGGCGAGGATGTTAATATGAAGGTCATGTCCTTCTCTCAACAGGGGTCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTCCGTCAACCAACTTCTTCAGGAGGTACCTTAACATATGAGGGGCGATTTGAGATTCTTTCTTTGTCTGGTTCATATATGCCTTCTGAGAATGGTGTGACAAGAAGTAGATCAGGTGGGATGAGCGTCTCTTTGGCAGGTCCAGATGGTCGAGTGGTGGGAGGTGGCCTTGCTGGTCTGTTGGTAGCAGCAGGTCCTGTGCAGGTTGTTGTGGGAAGTTTTCTTCCAGGCCACCAGCAGATGCAGAAACCCAAGAAGCAAAAGACGAATCATTTTTCGCCCGTATCGTCTGGACATTATAATACCATCCCAGTTGATGAAATAAAAATCAGTTTTGGAGGAGTAAAGCCTATTATGACTCCTGCTGCATTTCAAGCAGACAACAATGCTGCTGCTTTTAACAACATCCAGGGCTCTAGCAACTCATCTGCTGATGACGGTGATGATGATGTAACCCTTTTGCCAGAAAAGGAGTCTAACCCCAGCCAAATCGGATGCTAA 1101 0.4932 MEEKDSFFAGLTVKANDAPESHHVTPRSENFGLFGGHTGTAPAPAPAPAPTTAPIPSPASAPVPSSVSAPEPVSVAAAPASTDVVKKKRGRPRKYGPDGKLALALSPMPISSSIPLTGDFSLWKRGRGRPVESVKKSFKYEFESPGPGDGIAYSVGANFTPHVLTVNAGEDVNMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSENGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQMQKPKKQKTNHFSPVSSGHYNTIPVDEIKISFGGVKPIMTPAAFQADNNAAAFNNIQGSSNSSADDGDDDVTLLPEKESNPSQIGC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1489 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 343 IPR039605 GO:0003680
Prci1g1489 366 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Prci1g1489 366 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Prci1g1489 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Prci1g1489 366 MobiDBLite consensus disorder prediction 18 100 - -
Prci1g1489 366 MobiDBLite consensus disorder prediction 336 366 - -
Prci1g1489 366 Gene3D - 161 293 - -
Prci1g1489 366 FunFam AT-hook motif nuclear-localized protein 1-like 161 292 - -
Prci1g1489 366 CDD DUF296 160 274 IPR005175 -
Prci1g1489 366 MobiDBLite consensus disorder prediction 43 65 - -
Prci1g1489 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 280 - -
Prci1g1489 366 ProSiteProfiles PPC domain profile profile. 156 295 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1489 Prci-Chr1 33707682 33712676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1489 68 355 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 52.862 1.02e-91 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1489 - - pcin:129313186 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci14g1999 14 27477726 27484318 Prci1g1489 1 33707682 33712676 CCT
Prci14g1999 14 27477726 27484318 Prci1g1489 1 33707682 33712676 ECH
Prci1g1489 1 33707682 33712676 Prci1g1489 1 33707682 33712676 ECH