Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1454 ATGTTTCCTTTACAGCGAGGCAATGAGCTGGTGATCCAATTTTCCATGAGTCCCGATTCTCAGCACCAACAAAGTAAGATCTCACAAGATCCGATTCTGGATGATAGAAAAATAGCCAACACCTCAACAGGGAACATACTTTCTCAAGTCACCAGCAATAAGAATAATAACAATCCTAACGGGTACAAGAAGAAAAAGATGATTCACAGAGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTTCTCTTTATGCTTCTCTCAGATCCCTTCTTCCTCTTGAGTACATCAAGGGAAAGCGATCGATATCAGATCACATGAATGAGGCTGTGAGTTATATAAAGCATCTACAGAAGAACATTAAAGAACTTGGCGCCAAGAGAGATGAATTGAAGAGACAGTACTCAGATAATTCTTCTTCTAACTTGGAAACCCCTGATGAGGGCCAACAGAAATCGATAAGCTTCACTGTTCATGAGAATAATAATGGTGCTGTGGGAATCGAAATTATCAGGTACTTGGAAGATGAAAGGTTCCTCCTTTCAAAGTTTCTGGAATTAGTGCTTGAACAAGGACTTGAAGTTGTTACTTGTCTCTCTAGCCAAGTCAATGGTAGAATACTTCATAGTGTCCACTGCGAGGTTAACAGTTCCAATAGTGTAGATCTACCTGAGCTGAGAAGGAAAATTGCAAGTTTCTCTTCTTAG 705 0.4028 MFPLQRGNELVIQFSMSPDSQHQQSKISQDPILDDRKIANTSTGNILSQVTSNKNNNNPNGYKKKKMIHREIERQRRQEMASLYASLRSLLPLEYIKGKRSISDHMNEAVSYIKHLQKNIKELGAKRDELKRQYSDNSSSNLETPDEGQQKSISFTVHENNNGAVGIEIIRYLEDERFLLSKFLELVLEQGLEVVTCLSSQVNGRILHSVHCEVNSSNSVDLPELRRKIASFSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1454 234 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Prci1g1454 234 Coils Coil 113 133 - -
Prci1g1454 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 136 IPR036638 GO:0046983
Prci1g1454 234 FunFam Transcription factor bHLH126 54 144 - -
Prci1g1454 234 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 53 231 - -
Prci1g1454 234 Gene3D - 56 144 IPR036638 GO:0046983
Prci1g1454 234 CDD bHLH_AtORG2_like 67 141 - -
Prci1g1454 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Prci1g1454 234 SMART finulus 70 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1454 Prci-Chr1 33117421 33119188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1454 69 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 45.294 1.60e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g1454 HLH 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1454 - - gmx:100780888 241.121