Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1407 ATGGCCTCTTCAGTTCTCCAGTCTCCTCACACTCGCTTCTACTCTGTCGCGCCAACACTTTCTTTCTCTTCTCTCTGTCCCGTTCGTCTCCGACTTCCCCAACTTCCTTCTTCTCCTTCTTCTTCTCCTCTGTCCCTGCGTAGCAGAACTCTGTCAAAGACCATTACAACCCCACTTGCCTATGTGACCGGACCCGCATCCGACCCCATTTTTAGTGAGTGCGACCCTAAGATAGATGGGTCGGATCCATGGCCGGAGAAAGTCCAACCTCCCGCCGTCATTAGCTGGGACCTTTTCTGGATGCTTTTGATGAAACACAAACTGCGGCTTGCCGTTTCAATTGCGACTCTAATTTGTTGCACCACTTGTACTCTTTCTATGCCCCTATTTTCTGGTCAATTTTTTGAAGTTCTAATTGGGGCAAGACCAGAACCATTATGGAGGCTGCTTAGTAAGGTTGGAATGCTGTATGCCCTTGAGCCACTTTTAACTGTTACTTTCGTTATAAACATGAACATAATGTGGGAAAAGATTATGTCAACACTAAGAGCTCAAATTTTTGGGAGGATATTGATGCAAAAGGTGGAGTTTTTTGACAGATACAAGGTTGGTGAACTCACCGGTTTGCTAACATCTGATTTGGGTTCTCTTAAAGATATTGTGAGTGAAAATGTTGCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCATTGGGACAATTTGCATTCTTTTTGCTTTATCACCTCAACTTGCTCCAATTTTGGGTATCCTAATGCTCACAGTTTCTGTTTCAGTTGCTGTCTACAAGAGATCAACTCTGCCGGTTTTTAAAGCACATGGGTTGGTTCAAGCATCCATATCTGACTGTGTAGCAGAAACATTTTCTGCTATTCGTACAGTAAGATCCTTTGGTGGAGAGAAACGCCAAATGTTTACATTTGCTAACCAGGTTCTTTCTTACCAATCAAGCGGGATAAGGCTTGCCACTTTTAAATCTCTGAATGAGTCCATGACTAGAGTTGCTGTTTATGTTTCTTTGCTGGCATTATATATCCTTGGAGGAAACAAAGTTAAAGCGGGTGAACTCTCTGTTGGAACTGTGGCGTCTTTTATTGGATACACTTTCACATTAACTTTCGCTGTTCAAGGAGTGGTTAATACTTTTGGAGACCTACGTGGAGCTATTGCTGCTGTTGAGAGGATTAACAATGTTTTCTCTGAGGTTCAAATTGATGAAGCCCTTGCTTATGGCTTAGAAAGAGAACTGAAACAGAACAAATTGGATGATGATAACTATAAACTGTTCTTCTCTGATAATTCTACTGAAGAAATCCAACAAAAATACTTGCATTACATGTCAGCATTGAAATCCTCAAGCAATGTGTACAGCTTAGCTTGGTCTGGAGACGTTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTAAGTGGCTTAAATTTAACACTAAAATGTGGAACCATAACTGCATTGGTGGGTTCCAGTGGTGCAGGAAAAAGTACAATAGTACAGCTGTTGGCTCGTTTTTATGAGCCAACAAAGGGTCATATAACAGTTGCTGGAGAGGATGTTCGATCATTTGACAAGAGCGAATGGGCTCGGGCTGTCTCTATCGTAAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATACGGGCTTCCAGATGATAATGTTTCTAAAGAAGATGTAATCAAAGCATCAAAAGCTGCAAATGCTCACGACTTTATACTTTCACTTCCACAGGGTTATGATACACTAGTTGGTGAGCGTGGAGGCCTACTAAGTGGGGGACAGAGGCAGAGAATAGCTATTGCACGAGCACTCTTAAAGAATGCCCCAATCCTTATACTTGATGAGGCCACCAGTGCCTTAGATGCAGTTAGTGAAAGGTTGGTCCAGGACGCTCTGAACCATTTGATGAAGGGGAGGACAACGTTAGTGATAGCTCACAGATTGAGCACAGTTCAAAATGCTCATCAAATTGCACTCTGTTCTAATGGCAAGATTGCAGAACTTGGAACACACACTGAGTTATTGGCTAGGAAAGGCCAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAATGA 2148 0.425 MASSVLQSPHTRFYSVAPTLSFSSLCPVRLRLPQLPSSPSSSPLSLRSRTLSKTITTPLAYVTGPASDPIFSECDPKIDGSDPWPEKVQPPAVISWDLFWMLLMKHKLRLAVSIATLICCTTCTLSMPLFSGQFFEVLIGARPEPLWRLLSKVGMLYALEPLLTVTFVINMNIMWEKIMSTLRAQIFGRILMQKVEFFDRYKVGELTGLLTSDLGSLKDIVSENVARDRGFRALSEVIGTICILFALSPQLAPILGILMLTVSVSVAVYKRSTLPVFKAHGLVQASISDCVAETFSAIRTVRSFGGEKRQMFTFANQVLSYQSSGIRLATFKSLNESMTRVAVYVSLLALYILGGNKVKAGELSVGTVASFIGYTFTLTFAVQGVVNTFGDLRGAIAAVERINNVFSEVQIDEALAYGLERELKQNKLDDDNYKLFFSDNSTEEIQQKYLHYMSALKSSSNVYSLAWSGDVCLEDVYFSYPLRPDVEILSGLNLTLKCGTITALVGSSGAGKSTIVQLLARFYEPTKGHITVAGEDVRSFDKSEWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVSKEDVIKASKAANAHDFILSLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSNGKIAELGTHTELLARKGQYASLVGTQRLAFE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1407 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 471 709 IPR003439 GO:0005524
Prci1g1407 715 SUPERFAMILY ABC transporter transmembrane region 99 407 IPR036640 GO:0005524|GO:0016020
Prci1g1407 715 CDD ABC_MTABC3_MDL1_MDL2 473 710 - -
Prci1g1407 715 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 469 713 - -
Prci1g1407 715 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 86 713 IPR039421 -
Prci1g1407 715 ProSitePatterns ABC transporters family signature. 612 626 IPR017871 GO:0005524|GO:0016887
Prci1g1407 715 Gene3D - 469 712 IPR027417 -
Prci1g1407 715 Gene3D ABC transporter type 1, transmembrane domain 95 413 IPR036640 GO:0005524|GO:0016020
Prci1g1407 715 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 394 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g1407 715 Pfam ABC transporter transmembrane region 111 381 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g1407 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 710 IPR027417 -
Prci1g1407 715 SMART AAA_5 498 692 IPR003593 GO:0016887
Prci1g1407 715 CDD ABC_6TM_TAP_ABCB8_10_like 117 402 - -
Prci1g1407 715 Pfam ABC transporter 489 640 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1407 Prci-Chr1 31424360 31431034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1407 468 715 Calmodulin-binding Proteins AT2G36910 53.571 7.35e-74 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1407 K05657 - gmx:100791034 1065.06