Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1388 ATGGATGGGGATAATAGCGACTTGGGCAGTGCGCATGAAGAAAATATTGAAGTCAGACCTGAGACATCGAATAACTTGGACTTGAATGTGGAGCAGAACTGTTGTAGCCCCAATGTTATACATATTAATGATGCTCAATCTGGTCATCCTTCCACAGGTGAAACCAGTACCAGTAATGTATTAGGAATTGGGACAGAATTTGAATCTGATGAGCATGCATACAGATTCTATAACAAATATGCCAGGTTGGTGGGTTTCAGTGTTCGAAAAGATTGGGTAAATAGGAGTAAAGTACATGGTCAGGTGGTGTCTAGGAAGTTTACTTGCTCCAAAGAAGGATACCGTAGGAAAGACAAAAGAGACATTAATGTGAAGAAACATAGGAAAGAAACAAGGACTGGTTGCTTGGCTCATATGATCATCACTCGCCAACCAGATGGTAAGTACCGAGTTACCCATTTTGAAGAACAGCACAATCATGATAGTATAAATCCTTGTAATGCTCACACGTTGATGTTGCAAAATGAACAAAATGCTGCTCAAGATGTAGAAGCTGACCTGAAAAATACTGTGGGACCAAAGTCAAAGTCAGCATTTGAAATGATGAATAGAAAATTTGCAGCTCGTGTGTCTCTTGATCAAATTTCTATGGATTATGACAATCATCTTCAGTCAGAGAGGGATAGAGATATGAATGAAGGAGAAGCAGGTCATTTATTGGGTTACTTTCAAAGACAGCATTTTGAAAATCCCACATTTTTTTATTCCATACAATTAGATGTTGATGATAAGGTAAGCAATATATTTTGGTCTGATGACAGTATGGTACTGGATTATGATTATTTTGGTGATGTTATTTGTTTGGACACAACTTGCAGAACAAACAGAGAACTTCGACCGTTTGTGCAATTTATAGGTGTTAATCATCACAAGCAGGTGGTGATCTTTGCAGCTGCACTTCTCTATGATGATACTACTGAATCATTTAATTGGCTATTTCGTACCTTCATTAATGCTATGTCTGGGAAAAAGCCTAAGGCTATTCTCACAGAACAAGAAGCTATTATTATTGAAGCCGTCAATACAGTTTTGCCTGAAACAAACCATCTTACTTGTGTATGGCACATGTATGAAAACACTTTAAGACACCTGAGTCAAGTCGTTAAGGATGCTAATTCTTTTGCCAATGATCTTCGATGCTGTATTTATGACCACAAATATGAGGAGGACTTTACTCATGCTTGGGAGGCTATGTTGGAGAAGTATGATCTCCAGAAAAATGAATGGTTGAGATGGATGTACAGAGAAAGAGAGAAATGGGCAGTTGTCTTTGGTCGAAATACATTTTTTTTGGATACAAAAGGCTTTCATTTAGGTGAGATTTTGTCTCATAAATTTAGAGGTTATTTAAATTCTGACCTTGATGTCATTCAATTCTTGAAGCATTTTGAAAGGGTAGTGGATGAACTACGTTATGAAGAAATTGAAGCTAATGATGAGATGAGAAGATGTTTGCCAAGACTAATGGGTAATGTTGTTTTGTTAAAGCATGGAAGTGATGTATATACTCCAAGGGCATTTGAAGTATTTCAGCAAGGATATGAGAAGTCTTTAAATGTTGTTGTTAACCAATTCAGTAGGAATGGATCACTGCTTGAGTATAAAGCAAATACGTTTGGACATATTAGACAATATAATGTCACATTCAATTCTTTGGATGATACAGTTGTGTGCAGTTGCATGCAGTTTGAGCATGTTGGATTTTTGTGCGGCCATGCACTAAAAGTGCTTGACCATAGGAACATAAAAGTGGTTTCATCTGGGTACATCTTGAAAAGATGGACAAAAGAGGCAAGGTTCGGAACTGTCAAGGAGATTTTTGACATGCAAAATGATCCTAAGATGATTGTAGCGAGCCGTTACAAGGATTTGTGCCACAGACTGCTCAAGTTTTCAGCAAGGGCCTCTGAATCTGATGAAGCTTATCGATTCGCTCAGAGGAAACTTGATGAGATAATGGAAGGAGTTGAGAAAATCTTGACATTGAAAGGTGTAGAAACTCATATTATCACCTCCAGTAGCGTTGATGTAAATGCTTCTGAGAATGAGCCTGCAGACATCTTTCTCAATGGACAAGCAATGGAAGATCAAAATGAAAGTAACAGAATGGATGAAGAAAAAGAAGGGAGTTCTACGCCTGTTAGGGGCCATCAAACAACTATGCATTGCGATGGATTAGACACTGAAAGGGTTCTAGATGTGGAAGTCTCTCCGCCTGATACTGTTGCCTGCATTTCAAGTCCTTCTTCTGCATACGTTTCTTCTCAATCTACAACACCAAATCCCATTATGCAGGGACTGTATAATTTTGAAGCCAACCATGTGGTTCAGTGCATGTATGAACAGTCCAATCTTGCGCTGGACTCCCAATCTAACGATAACACGTACCATCCACAGAACTTCTTTTCTAACCAACGGGATTCTCCTGGCCAATCTCAACTACTTCAGGAGCCTGTAATCCAAAGCACATACCAGCAATCCATCCGCAGCACTAATCAAATGAGACAGGTAATGGATATCCAAAATCCCCATTCATCTTCATTCTTGCTGTATGATCATAGATACAGAACTTCAGACGCTGCATAA 2646 0.3878 MDGDNSDLGSAHEENIEVRPETSNNLDLNVEQNCCSPNVIHINDAQSGHPSTGETSTSNVLGIGTEFESDEHAYRFYNKYARLVGFSVRKDWVNRSKVHGQVVSRKFTCSKEGYRRKDKRDINVKKHRKETRTGCLAHMIITRQPDGKYRVTHFEEQHNHDSINPCNAHTLMLQNEQNAAQDVEADLKNTVGPKSKSAFEMMNRKFAARVSLDQISMDYDNHLQSERDRDMNEGEAGHLLGYFQRQHFENPTFFYSIQLDVDDKVSNIFWSDDSMVLDYDYFGDVICLDTTCRTNRELRPFVQFIGVNHHKQVVIFAAALLYDDTTESFNWLFRTFINAMSGKKPKAILTEQEAIIIEAVNTVLPETNHLTCVWHMYENTLRHLSQVVKDANSFANDLRCCIYDHKYEEDFTHAWEAMLEKYDLQKNEWLRWMYREREKWAVVFGRNTFFLDTKGFHLGEILSHKFRGYLNSDLDVIQFLKHFERVVDELRYEEIEANDEMRRCLPRLMGNVVLLKHGSDVYTPRAFEVFQQGYEKSLNVVVNQFSRNGSLLEYKANTFGHIRQYNVTFNSLDDTVVCSCMQFEHVGFLCGHALKVLDHRNIKVVSSGYILKRWTKEARFGTVKEIFDMQNDPKMIVASRYKDLCHRLLKFSARASESDEAYRFAQRKLDEIMEGVEKILTLKGVETHIITSSSVDVNASENEPADIFLNGQAMEDQNESNRMDEEKEGSSTPVRGHQTTMHCDGLDTERVLDVEVSPPDTVACISSPSSAYVSSQSTTPNPIMQGLYNFEANHVVQCMYEQSNLALDSQSNDNTYHPQNFFSNQRDSPGQSQLLQEPVIQSTYQQSIRSTNQMRQVMDIQNPHSSSFLLYDHRYRTSDAA 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1388 881 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 678 IPR031052 GO:0006355
Prci1g1388 881 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
Prci1g1388 881 Pfam MULE transposase domain 285 379 IPR018289 -
Prci1g1388 881 MobiDBLite consensus disorder prediction 1 20 - -
Prci1g1388 881 SMART 26again6 576 603 IPR006564 GO:0008270
Prci1g1388 881 MobiDBLite consensus disorder prediction 716 741 - -
Prci1g1388 881 MobiDBLite consensus disorder prediction 1 23 - -
Prci1g1388 881 ProSiteProfiles Zinc finger SWIM-type profile. 565 601 IPR007527 GO:0008270
Prci1g1388 881 MobiDBLite consensus disorder prediction 718 732 - -
Prci1g1388 881 MobiDBLite consensus disorder prediction 809 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1388 Prci-Chr1 30499598 30503361 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Prci1g1388 MULE 1.2e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1388 - K17604 gmx:100809803 1317.75