Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1377 ATGGGTTTTGAGGGTTTAATTAGGATCAATAGTAGAAACTACAGCTGTGGGAGTGCAAGAGTTGTGGCTGATATTTCTCCACACAATCGCTATATTTCTCCACCTGTTTCCACTCAACAGAATATGGATGGCCCTGGTGGTGATATGGGTCTGATTGGGGAATTTGATCATAGTTTGATTGGTAGATTGAGGGATGATGAGTATGAGAGTCGGTCCGGGAGCGATAATTTTGAAGGAATTTCCATTGACGATCAGGATGCTGGTGATGATCAGCCTCAGAGAAGAAAGAAATATCATAGACACACTCCTAATCAAATTCAAGAGCTTGAAGCATTTTTCAAGGAGTGTCCTCATCCCGATGAGAAGCAGAGGATGGAACTTAGTAAGAGGCTAAATTTGGAGAATAAACAAGTCAAGTTCTGGTTTCAAAATCGACGAACTCAAATGAAGACTCAACTGGAACGCCATGAAAATCTAATTCTCAGACAAGAAAACGAGAAACTCCGAGCTGAGAATAGCATGATAAAGGAAGCCATGTCGAACCCGATGTGTAACAGATGTGGTGGCCCAGCCATTCCTGGTCAAATTTCATTTGAGGACCACCATCTCAGAATTGAAAATGCTCGGCTGAAGGATGAATTGAATCGAATATGTGCCTTGGCAAACAAGTTCCTGGGTAGGCCACTCTCATCCTTGGCCAGCCCCACTGCTGTTATGGGTTCAAATTCTGGTCTTGAACTTGCTATAGGAAGGAGCGAAATTGGCAGCTCAAGCACTCTAGGTTCTTCTCTGCCAATGGGGCTTGATTTAGGAGAAGGTGTTTTGGGCACACCTTCTGCAATGCCACGAATTAGATCGCCAATGGGAATGATCGGAGGTGAAATTCAGTTCGATAGGTCTATGCTCATTGATCTTGCACTATCTGCTATGGAGGAATTAATGAAGATGGCTCAGGCAGATAGCTCTCTCTGGATTAAAAGTTTGGGTGGTGAGAAAGAGATACTGGACCATGAAGAGTATGACAGGATAATTTCTCCCTCTATTGGCCCGAAACCGGCTGGTTTTGTAACTGAAGCTACAAAGGAAACCGGGATAGTCATCATTAACAGTTTAGCCCTCGTGGAGACATTGATGGACGCAACCCGGTGGGCGGAGATGTTCCCATCCTTGATTGCTAGAGCTGCCACGGTTGATGTAATATCAAATGGTATGGGTGGAACCAGAAATGGTGCTTTGCAAGTGATGCATGCTGAGGTTCAACTACTTTCGCCACTCGTCCCAGTGCGTCAATTGAGATTTCTCCGGTTTTGCAAGCAGCATACTGAAGGTGTATGGGCTGTAGTTGATGTTTCAATTGAGATTGGCCATGGTGGAATCAACAGCCACCCCTTCATGGCCTGTAGGAGGCTTCCTTCAGGCTGCCTTGTGCAAGATACGCCCAACGGTTATTCTAAGGTTACATGGGTTGAGCATATGCAATATGATGAAAGTGTTGTTCACCAACTCTATAGGCCATTGCTTAATTCCGGCTTCGGCTTTGGTGCTCATAGGTGGATCGCCACCCTTCAAAGGCAATGTGAATGCTTGGCAATCCTCATGTCCTCTTCTATACCTATTGAGGATCATACAGCTTTAAGCCAAGCTGGTAGGAGAAGCTTGTTGAAGCTGGCACAACGCATGACCAATAACTTCTGTTCTGGGGTTTGTTTATCGTCGGCGCGCAAGTGGGACAGCCTTCACATTGGCACTTTAAGCGATGACGTGAAAGTGATGACCCGGAAGAATGTGGACGACCCCGGTGAGCCCCCTGGGATTGTGCTGAGTGCTGCAACTTCTGTTTGGATCCCGGTGTCCCGGGAAAATCTGTTCAATTTCCTGCGTGATGAACAGCTGAGAAGTGAGTGGGACATTTTGTCGAATGGGGGACCGATGCAGGAGATGGTCCATATTGCTAAAGGTCAAGGATCTGGAAATTGTGTCTCCCTCCTTCGTGCCAGTGCTGTGAATCCCAACGAGAGTAACATGGTAATTCTGCAAGAGACATGGACTGATCCGTCATGCTCGGTGGTGGTGTACGCACCGGTCGACGTGCAATCCTTGAATGTCGTAATGAGCGGCGGAGACTCCGCCTACGTCGCCCTCTTGCCTTCAGGTTTCGCCATCCTTCCTGACGGCCGTCAAACAAGCTTCACCAGCAGTTTACTCAAAGGTTGCAGCCCCAACGGATCCAGCGACCACCAAGGAAGCCTCCTGACAGTTGGGTTCCAGATTCTGGTGAACAGCCTCCCAACGGCGAAGCTCACGGTGGAGTCTGTTGAGACAGTGAACAACCTCATCTCATGCACCATTCAGAAGATCAAAAGCTCCCTGCGAGTTGCATGA 2382 0.4752 MGFEGLIRINSRNYSCGSARVVADISPHNRYISPPVSTQQNMDGPGGDMGLIGEFDHSLIGRLRDDEYESRSGSDNFEGISIDDQDAGDDQPQRRKKYHRHTPNQIQELEAFFKECPHPDEKQRMELSKRLNLENKQVKFWFQNRRTQMKTQLERHENLILRQENEKLRAENSMIKEAMSNPMCNRCGGPAIPGQISFEDHHLRIENARLKDELNRICALANKFLGRPLSSLASPTAVMGSNSGLELAIGRSEIGSSSTLGSSLPMGLDLGEGVLGTPSAMPRIRSPMGMIGGEIQFDRSMLIDLALSAMEELMKMAQADSSLWIKSLGGEKEILDHEEYDRIISPSIGPKPAGFVTEATKETGIVIINSLALVETLMDATRWAEMFPSLIARAATVDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQLRFLRFCKQHTEGVWAVVDVSIEIGHGGINSHPFMACRRLPSGCLVQDTPNGYSKVTWVEHMQYDESVVHQLYRPLLNSGFGFGAHRWIATLQRQCECLAILMSSSIPIEDHTALSQAGRRSLLKLAQRMTNNFCSGVCLSSARKWDSLHIGTLSDDVKVMTRKNVDDPGEPPGIVLSAATSVWIPVSRENLFNFLRDEQLRSEWDILSNGGPMQEMVHIAKGQGSGNCVSLLRASAVNPNESNMVILQETWTDPSCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGRQTSFTSSLLKGCSPNGSSDHQGSLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKIKSSLRVA 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1377 793 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Prci1g1377 793 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Prci1g1377 793 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Prci1g1377 793 FunFam Homeobox-leucine zipper protein HDG1 81 168 - -
Prci1g1377 793 CDD START_ArGLABRA2_like 299 527 - -
Prci1g1377 793 ProSiteProfiles START domain profile. 295 531 IPR002913 GO:0008289
Prci1g1377 793 Pfam START domain 305 528 IPR002913 GO:0008289
Prci1g1377 793 SUPERFAMILY Bet v1-like 297 528 - -
Prci1g1377 793 SUPERFAMILY Homeodomain-like 81 152 IPR009057 -
Prci1g1377 793 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 91 790 IPR042160 -
Prci1g1377 793 SUPERFAMILY Bet v1-like 556 787 - -
Prci1g1377 793 FunFam Homeobox-leucine zipper protein GLABRA 2 304 527 - -
Prci1g1377 793 CDD homeodomain 95 152 IPR001356 GO:0003677
Prci1g1377 793 SMART START_1 304 528 IPR002913 GO:0008289
Prci1g1377 793 Gene3D - 81 168 - -
Prci1g1377 793 MobiDBLite consensus disorder prediction 68 104 - -
Prci1g1377 793 Coils Coil 146 181 - -
Prci1g1377 793 SMART HOX_1 94 156 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1377 Prci-Chr1 30312201 30318723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1377 47 790 Homeobox Transcription Factor Family AT3G61150 59.711 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g1377 START 8.8e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1377 K09338 - gmx:100785102 1244.95