Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1375 ATGGATGGCCCTGGTGGTGATATGGGTCTGATTGGGGAATTTGATCATAGTTTGATTGGTAGATTGAGGGATGATGAGTATGAGAGTCGGTCCGGGAGCGATAATTTTGAAGGAATTTCCATTGACGATCAGGATGCTGGTGATGATCAGCCTCAGAGAAGAAAGAAATATCATAGACACACTCCTAATCAAATTCAAGAGCTTGAAGCATTTTTCAAGGAGTGTCCTCATCCCGATGAGAAGCAGAGGATGGAACTTAGTAAGAGGCTAAATTTGGAGAATAAACAAGTCAAGTTCTGGTTTCAAAATCGACGAACTCAAATGAAGACTCAACTGGAACGCCATGAAAATCTAATTCTCAGACAAGAAAACGAGAAACTCCGAGCTGAGAATAGCATGATAAAGGAAGCCATGTCGAACCCGATGTGTAACAGATGTGGTGGCCCAGCCATTCCTGGTCAAATTTCATTTGAGGACCACCATCTCAGAATTGAAAATGCTCGGCTGAAGGATGAATTGAATCGAATATGTGCCTTGGCAAACAAGTTCCTGGGTAGGCCACTCTCATCCTTGGCCAGCCCCACTGCTGTTATGGGTTCAAATTCTGGTCTTGAACTTGCTATAGGAAGGAGCGAAATTGGCAGCTCAAGCACTCTAGGTTCTTCTCTGCCAATGGGGCTTGATTTAGGAGAAGGTGTTTTGGGCACACCTTCTGCAATGCCACGAATTAGATCGCCAATGGGAATGATCGGAGGTGAAATTCAGTTCGATAGGTCTATGCTCATTGATCTTGCACTATCTGCTATGGAGGAATTAATGAAGATGGCTCAGGCAGATAGCTCTCTCTGGATTAAAAGTTTGGGTGGTGAGAAAGAGATACTGGACCATGAAGAGTATGACAGGATAATTTCTCCCTCTATTGGCCCGAAACCGGCTGGTTTTGTAACTGAAGCTACAAAGGAAACCGGGATAGTCATCATTAACAGTTTAGCCCTCGTGGAGACATTGATGGACGCAACCCGGTGGGCGGAGATGTTCCCATCCTTGATTGCTAGAGCTGCCACGGTTGATGTAATATCAAATGGTATGGGTGGAACCAGAAATGGTGCTTTGCAAGTGATGCATGCTGAGGTTCAACTACTTTCGCCACTCGTCCCAGTGCGTCAATTGAGATTTCTCCGGTTTTGCAAGCAGCATACTGAAGGTGTATGGGCTGTAGTTGATGTTTCAATTGAGATTGGCCATGGTGGAATCAACAGCCACCCCTTCATGGCCTGTAGGAGGCTTCCTTCAGGCTGCCTTGTGCAAGATACGCCCAACGGTTATTCTAAGGTTACATGGGTTGAGCATATGCAATATGATGAAAGTGTTGTTCACCAACTCTATAGGCCATTGCTTAATTCCGGCTTCGGCTTTGGTGCTCATAGGTGGATCGCCACCCTTCAAAGGCAATGTGAATGCTTGGCAATCCTCATGTCCTCTTCTATACCTATTGAGGATCATACAGCTTTAAGCCAAGCTGGTAGGAGAAGCTTGTTGAAGCTGGCACAACGCATGACCAATAACTTCTGTTCTGGGGTTTGTTTATCGTCGGCGCGCAAGTGGGACAGCCTTCACATTGGCACTTTAAGCGATGACGTGAAAGTGATGACCCGGAAGAATGTGGACGACCCCGGTGAGCCCCCTGGGATTGTGCTGAGTGCTGCAACTTCTGTTTGGATCCCGGTGTCCCGGGAAAATCTGTTCAATTTCCTGCGTGATGAACAGCTGAGAAGTGAGTGGGACATTTTGTCGAATGGGGGACCGATGCAGGAGATGGTCCATATTGCTAAAGGTCAAGGATCTGGAAATTGTGTCTCCCTCCTTCGTGCCAGTGCTGTGAATCCCAACGAGAGTAACATGGTAATTCTGCAAGAGACATGGACTGATCCGTCATGCTCGGTGGTGGTGTACGCACCGGTCGACGTGCAATCCTTGAATGTCGTAATGAGCGGCGGAGACTCCGCCTACGTCGCCCTCTTGCCTTCAGGTTTCGCCATCCTTCCTGACGGCCGTCAAACAAGCTTCACCAGCAGTTTACTCAAAGGTTGCAGCCCCAACGGATCCAGCGACCACCAAGGAAGCCTCCTGACAGTTGGGTTCCAGATTCTGGTGAACAGCCTCCCAACGGCGAAGCTCACGGTGGAGTCTGTTGAGACAGTGAACAACCTCATCTCATGCACCATTCAGAAGATCAAAAGCTCCCTGCGAGTTGCATGA 2259 0.479 MDGPGGDMGLIGEFDHSLIGRLRDDEYESRSGSDNFEGISIDDQDAGDDQPQRRKKYHRHTPNQIQELEAFFKECPHPDEKQRMELSKRLNLENKQVKFWFQNRRTQMKTQLERHENLILRQENEKLRAENSMIKEAMSNPMCNRCGGPAIPGQISFEDHHLRIENARLKDELNRICALANKFLGRPLSSLASPTAVMGSNSGLELAIGRSEIGSSSTLGSSLPMGLDLGEGVLGTPSAMPRIRSPMGMIGGEIQFDRSMLIDLALSAMEELMKMAQADSSLWIKSLGGEKEILDHEEYDRIISPSIGPKPAGFVTEATKETGIVIINSLALVETLMDATRWAEMFPSLIARAATVDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQLRFLRFCKQHTEGVWAVVDVSIEIGHGGINSHPFMACRRLPSGCLVQDTPNGYSKVTWVEHMQYDESVVHQLYRPLLNSGFGFGAHRWIATLQRQCECLAILMSSSIPIEDHTALSQAGRRSLLKLAQRMTNNFCSGVCLSSARKWDSLHIGTLSDDVKVMTRKNVDDPGEPPGIVLSAATSVWIPVSRENLFNFLRDEQLRSEWDILSNGGPMQEMVHIAKGQGSGNCVSLLRASAVNPNESNMVILQETWTDPSCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGRQTSFTSSLLKGCSPNGSSDHQGSLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKIKSSLRVA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1375 752 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Prci1g1375 752 CDD homeodomain 54 111 IPR001356 GO:0003677
Prci1g1375 752 Coils Coil 105 140 - -
Prci1g1375 752 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Prci1g1375 752 Pfam START domain 264 487 IPR002913 GO:0008289
Prci1g1375 752 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Prci1g1375 752 FunFam Homeobox-leucine zipper protein HDG1 40 127 - -
Prci1g1375 752 MobiDBLite consensus disorder prediction 23 62 - -
Prci1g1375 752 CDD START_ArGLABRA2_like 258 486 - -
Prci1g1375 752 SUPERFAMILY Bet v1-like 515 746 - -
Prci1g1375 752 FunFam Homeobox-leucine zipper protein GLABRA 2 263 486 - -
Prci1g1375 752 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 749 IPR042160 -
Prci1g1375 752 SMART HOX_1 53 115 IPR001356 GO:0003677
Prci1g1375 752 Gene3D - 40 127 - -
Prci1g1375 752 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Prci1g1375 752 SUPERFAMILY Bet v1-like 256 487 - -
Prci1g1375 752 SMART START_1 263 487 IPR002913 GO:0008289
Prci1g1375 752 SUPERFAMILY Homeodomain-like 40 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1375 Prci-Chr1 30312201 30319133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1375 6 749 Homeobox Transcription Factor Family AT3G61150 59.711 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g1375 START 7.9e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1375 K09338 - gmx:100785102 1239.17