Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1374 ATGGCTTCGCCGCCGGTGGATCGCAAAGGCGAGTCCTCGGCCGGAGAGTCCCAGAGATCTATGCCGACGCCTTTTCTAACGAAAACTTATCAACTTGTTGACGATCATACCATAGACGATGTCATATCATGGAACGAATATGGAACCAGTTTCATCGTCTGGAATCCGACGGTTTTCGCCAGAGATTTGCTTCCTAAATATTTCAAGCACAACAATTTCTCCAGCTTCGTCCGTCAACTTAACACCTATGGATTCAGAAAAGTAGTACCTGATCGGTGGGAATTCACGAATGAGTGTTTTCGCAGAGGCAAGAAACAACTATTGTGCGAAATTCAGCGTCGGAAAATCTCGCCGCCGTCGGCACCAGCAGCCGGTGCAAGTGCAACTGCAGCCGCGTCAGTTCCGACGGCGGTGCCATTGACGGCAAGACCAATGGCGAAACATATCATATCGCCTTCAAATTCAGGGGAAGAACAAGCCATTTCGTCGAATTCATCGCCGACTGGAGCTCCGGCTGAGCTTTTAAACGAGAACGAGAGGTTGAGAAAGGAAAACATTCAGCTGAGCAAACAATTAGCAGAGATGAGATCTCTTTGTAACAACATATTCAATCTCATGTCAAAGTACGCAAATAATCAAAATATCAGCTCGCAAGATAGACTGGGCGACTTCACCGCCGTGAAACCGCTCGATTTGATGCCGGTCGCACGGTGCGCCGGTAACGAGGATGCGGTGGCGATTGCGGAAGTCGACATGAATCCGAAGCTGTTTGGGGTGGCGATAGGTGCGAAGCGATCAAGGGACGGCGGAGGCGGTGGCGGAGGTGGAGGCGATACAGTGTTAAGCTTGCACAGAGTGGGGCCCATGGAGATGAAATCAGAACCGTTGGGTTGCCAGAGGCGTCGAGATAATCAGGAAGCGCCGTGGCTGAATCAATGCCATAACGCGAATCAGAGAGTTTGTAATTAA 969 0.5026 MASPPVDRKGESSAGESQRSMPTPFLTKTYQLVDDHTIDDVISWNEYGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNECFRRGKKQLLCEIQRRKISPPSAPAAGASATAAASVPTAVPLTARPMAKHIISPSNSGEEQAISSNSSPTGAPAELLNENERLRKENIQLSKQLAEMRSLCNNIFNLMSKYANNQNISSQDRLGDFTAVKPLDLMPVARCAGNEDAVAIAEVDMNPKLFGVAIGAKRSRDGGGGGGGGGDTVLSLHRVGPMEMKSEPLGCQRRRDNQEAPWLNQCHNANQRVCN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1374 322 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1374 322 MobiDBLite consensus disorder prediction 152 172 - -
Prci1g1374 322 Coils Coil 178 198 - -
Prci1g1374 322 Gene3D - 17 115 IPR036388 -
Prci1g1374 322 MobiDBLite consensus disorder prediction 1 22 - -
Prci1g1374 322 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1374 322 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1374 322 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1374 322 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1374 322 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1374 322 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 233 IPR027725 -
Prci1g1374 322 FunFam Heat stress transcription factor B-4 17 115 - -
Prci1g1374 322 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Prci1g1374 322 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1374 Prci-Chr1 30179303 30180953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1374 1 322 HSF AT5G62020 46.018 5.87e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci1g1374 HSF_DNA-bind 1.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1374 K09419 - gmx:100812267 397.127