Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1370 ATGGAGCAATACATTCTTCAAAATCTTTCAGACATGATTGGTGAAGCTAGAGATCAAATTGAATACCACCTCCGAGTACTTAAAAATGAAGTAGAAGATGAAGAAGATGGATCATGTGAAGAACTAGAAGAAGATTCTGGAGAGGATCCCATTGAAGAAGGTGAGCAAAAGCAGCTAGATGAAACAACTCTTAAAGAGAACGATCATGAATCAGGATATGTTAAATCAAATGATAAGAAGAGGTGTCTGAATGTTGCATCTGGTGAATTATCTACATTGCTATGCTATCAATCACAAAAGAAGTGCAAGCAAGTGGGATCTTCTGGTCCAAAATTAGAGTCCAGACCCTCAGATCTGGAGCTCAATAATGACTCTGTAACTGCAGTGGCATCTATTATTGATAATTGTACTTCCGAAGAAGGTACTGGGAGTTCTGGAAAACGAAGGCGGAGCAGATGGGAACCACAGTCTGAGGATGATGGCATAAAAGACGATCAGACCTGCAAGAGGAGGAAAACCAGGTGGTCCAATGAGGACACTCAACTAAAAATGCTGGGGCCACTTCAGCTGCCTGATTTTGCAAAAGATTTTCTTGTTGGATATGAGAATAATCCTGAAATTCAAGGGCTGAAAGCTGAGCTTCTTGAGATTAATAGAAGATTGCATGGACCTCTTTATGATGATAAGCTTGAGGGAGAAAGATCTCCTTCACCAGAACCAATATATGATGACCTTGGCCTCAGAATAAATACAAGAGAAAAAGGACTTCGTCAGAAACTTGTCCAGAAACGTCAAAACATCATATCAAAGTTGATCGAATCAAACCCAAGTTTTAGCCCTCCTCCTGATTACAAGCCTCCGAAACTCTTCAAAAAACTCTACATACCAGTGAAAGAATTTCCAGATTACAATTTTGTTGGCCTTATAATTGGGCCTCGTGGAAACACAACGAAGAGAATGGAAAATGAAACTGGGGCCAAGATTCATGTTAGAGGTAAAGGATGCTCGAAAACACCCATCAATTCTGATTCTTCTAAAGAGGATTTACATGTGTATATAGAAGCAGAGAACAAAAATTCACTGGATGCGGCAGTTGCCATGGTTGAAAAATTGCTAATCCCAGTTGAAGGAAGAAATGAGCACAAGGAAGCTCAATTAAAGGAGCTGGCCATGCTGAATGGAACAGTTAGGGATGAAAATGTGTGCTATGTTTGTGGTGACGTGGGACACCAGTCATATGCCTGCCCTGACCTTCAATCAACTTTCAAACTGAACTCATGCAATACATATTTTAGTACCAGTTATTCAATACCTGCCTGTCCCTTGGACGTACTATCTCCACAGAATGACTCTGAGCAGGGTTCTGGTTCTGGTTTTAGCTTCAGTTCAACACAGAGTAGACAACGGAGGCCAGAAAAGAAATCATTGATGAATAATCTTTATGTTGGCAATCTACCTCAAGCGTTTGATGACAAGAGATTATCTGAGCTGTTTTCTCCATTTGGTAAGATCACTGAAGTAAAAGCTATCAAGAATCGAACAACTGGAATTTGTAAAGGGTATGGATTTGTCACTTTTGACAATGCCACGGATGCACAGGAAGCTGTGACTCATTTGAACGGTTTAGAAATAGATGGTAGGGTTTTGAAGGTAAGGATAGCAGGGCTTATGTCAAATACTGAATCTCCAAGATTAATTCTTCTTCCAGAGCGGTCTGGTCCTGCAGTTATATCCCAAAGTGTTAGAAGCCAAACATATTGGCCTGGCCCATTACATTTTATGCTGCCAGAACATCCAACTTCGTTTCACGACAGTAATGGTATAAATCTGTTTTCATCTGGTATCAACTCACAGCATCGTCGAAGCTTTTCTCCTCCAAGCTACAGCCCATGCCCTTCTGATTTTAGTAATTCCGGCAAAGTACGATTTTCATGCAACTTTTCAGAGCAAGGATTTTTGTCATCTGGCAGTTCAATTTCAGAGAGTCCTGGCTCCCAAATTCAGTCATATTTTATGACACCGCCACTCCAGAACGCTGCATTGTCCAATCCTGATTGCAGATCAGAAGATATAAATTCTTTCCCTTCTTCATCGCAGAGAAGGTATTACACTACACTTAACTGA 2124 0.4063 MEQYILQNLSDMIGEARDQIEYHLRVLKNEVEDEEDGSCEELEEDSGEDPIEEGEQKQLDETTLKENDHESGYVKSNDKKRCLNVASGELSTLLCYQSQKKCKQVGSSGPKLESRPSDLELNNDSVTAVASIIDNCTSEEGTGSSGKRRRSRWEPQSEDDGIKDDQTCKRRKTRWSNEDTQLKMLGPLQLPDFAKDFLVGYENNPEIQGLKAELLEINRRLHGPLYDDKLEGERSPSPEPIYDDLGLRINTREKGLRQKLVQKRQNIISKLIESNPSFSPPPDYKPPKLFKKLYIPVKEFPDYNFVGLIIGPRGNTTKRMENETGAKIHVRGKGCSKTPINSDSSKEDLHVYIEAENKNSLDAAVAMVEKLLIPVEGRNEHKEAQLKELAMLNGTVRDENVCYVCGDVGHQSYACPDLQSTFKLNSCNTYFSTSYSIPACPLDVLSPQNDSEQGSGSGFSFSSTQSRQRRPEKKSLMNNLYVGNLPQAFDDKRLSELFSPFGKITEVKAIKNRTTGICKGYGFVTFDNATDAQEAVTHLNGLEIDGRVLKVRIAGLMSNTESPRLILLPERSGPAVISQSVRSQTYWPGPLHFMLPEHPTSFHDSNGINLFSSGINSQHRRSFSPPSYSPCPSDFSNSGKVRFSCNFSEQGFLSSGSSISESPGSQIQSYFMTPPLQNAALSNPDCRSEDINSFPSSSQRRYYTTLN 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1370 707 FunFam Sex lethal, isoform D 460 555 - -
Prci1g1370 707 MobiDBLite consensus disorder prediction 135 174 - -
Prci1g1370 707 CDD KH-I_BBP 288 373 - -
Prci1g1370 707 ProSiteProfiles Zinc finger CCHC-type profile. 402 417 IPR001878 GO:0003676|GO:0008270
Prci1g1370 707 Gene3D - 445 561 IPR012677 -
Prci1g1370 707 PANTHER RNA-BINDING PROTEIN RELATED 139 607 IPR045071 -
Prci1g1370 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 550 IPR000504 GO:0003723
Prci1g1370 707 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 289 400 IPR036612 GO:0003723
Prci1g1370 707 SMART kh_6 289 373 IPR004087 GO:0003676
Prci1g1370 707 MobiDBLite consensus disorder prediction 33 51 - -
Prci1g1370 707 Gene3D K Homology domain, type 1 281 403 IPR036612 GO:0003723
Prci1g1370 707 MobiDBLite consensus disorder prediction 446 466 - -
Prci1g1370 707 Gene3D - 203 280 IPR047086 -
Prci1g1370 707 MobiDBLite consensus disorder prediction 29 76 - -
Prci1g1370 707 ProSiteProfiles Type-1 KH domain profile. 304 368 - -
Prci1g1370 707 MobiDBLite consensus disorder prediction 52 76 - -
Prci1g1370 707 SUPERFAMILY RNA-binding domain, RBD 464 554 IPR035979 GO:0003676
Prci1g1370 707 SUPERFAMILY Retrovirus zinc finger-like domains 397 420 IPR036875 GO:0003676|GO:0008270
Prci1g1370 707 SMART rrm1_1 479 552 IPR000504 GO:0003723
Prci1g1370 707 Pfam KH domain 304 369 IPR004088 GO:0003723
Prci1g1370 707 MobiDBLite consensus disorder prediction 446 472 - -
Prci1g1370 707 Pfam Splicing factor 1 helix-hairpin domain 171 285 IPR032570 -
Prci1g1370 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 556 IPR000504 GO:0003723
Prci1g1370 707 MobiDBLite consensus disorder prediction 143 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1370 Prci-Chr1 30044963 30048543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1370 401 554 Eukaryotic Initiation Factors Gene Family AT3G11400 30.573 1.78e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1370 K13095 - pcin:129306904 1312.36