Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1354 ATGAGTTTCCAAGGCTGTCCAAATGTGATATGGAGAATCACGCCCTCGCATATCCTCGTCTTCTTCCTTCTATCGTCGGCCGTCCATGCCCAGTCAAGTTCGGCACCTGAGGCTTCTCCCGGTGCTTCACTTCGCAACAGGAACGCCTTATTCGCTCCCGTGGTTGTCGCCCTCTGTTGCGCCTTCCTTTTCATCGCCTGCTTCGTCATCTACATCCTCCACTGCCCCGACTTGGAACTTCCTGCCGGAGACCCGACAGACGCTGCCACCGCCAATTGTTCTTCAAGTGTTCATCACAGCATCGACCCGAAATTAATCGAAATCTTCCCCATCCTCGTGTATTCCGCCGTCAAACACCTCGACTTTGGGAAAGCCTCCGCGCCGGAATGTGCGGTGTGCTTGAACGAGTTCGACCACCGCGATACGCTCCGATTGCTTCCGAAATGTCACCACGTGTTTCATCTTGAATGCATCGATGCCTCGTTAGCCTCCCATGTTACTTGCCCTGTTTGTCGCTCGAGGCTGAAGCAGGAGGAGGATCACCGCCGAGGTGAAGGCGATGAGGTGATAGTTATTCCGAATGAGGTTACAAATGCACAACAGGTGTTCGATGAAAGCTCTGTGACAAGAATGGAGCTTAATTCAGGCAACAGAAGTTTAGGGATGTGTCATTCAACTGGTCACTCTTTGGGTTTGGGTGAAAGTGAAATCGAAGAGGAAAGACACGGGGAGGTACAGTCTGAGGATGTCGGAAGATGTGAGCAAACAGATTCCGATGAATCACAGAGGAACGCGATGGTCGGCGAGCTAAAATGTGTTCGGAGGAAGGCCAGGTGA 837 0.5221 MSFQGCPNVIWRITPSHILVFFLLSSAVHAQSSSAPEASPGASLRNRNALFAPVVVALCCAFLFIACFVIYILHCPDLELPAGDPTDAATANCSSSVHHSIDPKLIEIFPILVYSAVKHLDFGKASAPECAVCLNEFDHRDTLRLLPKCHHVFHLECIDASLASHVTCPVCRSRLKQEEDHRRGEGDEVIVIPNEVTNAQQVFDESSVTRMELNSGNRSLGMCHSTGHSLGLGESEIEEERHGEVQSEDVGRCEQTDSDESQRNAMVGELKCVRRKAR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1354 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 182 IPR013083 -
Prci1g1354 278 MobiDBLite consensus disorder prediction 235 259 - -
Prci1g1354 278 Pfam Ring finger domain 129 172 IPR001841 -
Prci1g1354 278 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Prci1g1354 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 256 - -
Prci1g1354 278 SUPERFAMILY RING/U-box 129 179 - -
Prci1g1354 278 MobiDBLite consensus disorder prediction 235 267 - -
Prci1g1354 278 SMART ring_2 130 171 IPR001841 -
Prci1g1354 278 FunFam E3 ubiquitin-protein ligase ATL6 89 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1354 Prci-Chr1 29822608 29824800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1354 18 230 Rapid Response to Elicitors AT3G05200 38.819 2.32e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1354 K10664 - pcin:129287042 196.052