Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1349 ATGTCGAGCATTACAATAGCCCCTCTTCTTATTCATTCACGTTCGCTGATACAAGCTCCAATAATTAATAATATCCGAATGATAAAGAGAATCACACTATCGTGCATCATGATCTTCTTCCTTCTATCGTCGGCCGTTCATGCCCAGTCAAGTTCGCCGCCGGTGGCTTCTCCTAGTGCTACACCCCACAACCGAGAGCCATCCTTCGATCCTGTGGTTGTGGCCCTCGTTTTCGCCCTATTGTTCGTTAGCTGCTTCTCAACATACATCTGCCACGGCTGCAACAAAGACCTCACGGCCGGAGGCCTAACTGTCACCGGCACGAATTTCTGCTCAAGTGGTCCTCAAGGTGTCGACCTAAAGTTACTCGACACCTTCCCGATCCTCCGGTATTCCGCCGTGAAACACCTCAAATTTGGGAAAGCCCCACCGGAGTGTGCCGTCTGCTTGAGCAAGTTTAACCAGCAAGATACGCTCCGATTGCTTCCGATATGTAATCACGTTTTTCACCCAGAATGTATCGATGCCTGGTTAGCCTCCCACTTAACTTGCCCTGTTTGTCGCTCGAGGCTGATGCCGCTGGAGGAGCACCGCTGTGGTGGAAACGAAGTCGTGATACTAATTCCGAACGAGATAAATGCACACAGGGCGTTCGATGAAAGTTCTGAGAGTGGAACGGAGCTTAATTCAGTCAAAGGAAAAAGTTTGGGGAGGTGTCATTCAACGGGTCACTCTTTTGGATTTGGTGAAATCGAAGGGAAGAACAGGGAGAGGTACACTGATAGGATGTCAGGGGGTGATGTGAGGAAGCAGATTACGGTGAATCACGGAGGAATGCGACGGTCGGCGAGCTTCGAAGTGTTTGATTCTGCCTCCTCACTATACTGA 888 0.4989 MSSITIAPLLIHSRSLIQAPIINNIRMIKRITLSCIMIFFLLSSAVHAQSSSPPVASPSATPHNREPSFDPVVVALVFALLFVSCFSTYICHGCNKDLTAGGLTVTGTNFCSSGPQGVDLKLLDTFPILRYSAVKHLKFGKAPPECAVCLSKFNQQDTLRLLPICNHVFHPECIDAWLASHLTCPVCRSRLMPLEEHRCGGNEVVILIPNEINAHRAFDESSESGTELNSVKGKSLGRCHSTGHSFGFGEIEGKNRERYTDRMSGGDVRKQITVNHGGMRRSASFEVFDSASSLY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1349 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 43 197 - -
Prci1g1349 295 SUPERFAMILY RING/U-box 145 198 - -
Prci1g1349 295 CDD RING-H2_EL5-like 145 188 - -
Prci1g1349 295 SMART ring_2 146 187 IPR001841 -
Prci1g1349 295 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Prci1g1349 295 Pfam Ring finger domain 145 188 IPR001841 -
Prci1g1349 295 FunFam E3 ubiquitin-protein ligase ATL6 108 194 - -
Prci1g1349 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1349 Prci-Chr1 29703999 29705228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1349 36 272 Rapid Response to Elicitors AT3G05200 36.704 9.23e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1349 K10664 - pcin:129287042 220.705