Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1348 ATGATCAAGAGAGTCACACTCTCACACATCGTCGTCTTCTTGCTGTTATCATCGGCCGTCGTCGATGCCAAGTCAGCTCCGCAACCGGAAGCTCCTGGTAATCCTACAAGATTCCCCAACTGGGACCCATCATTCACTCCAGTGATTGCGGCCCTCGTCTGCGCCTTCTTGTTCGTTGTCTTCTTCTCCGTCTACCTCCGTCACTGCTCCGACACCGACCTAGTAGTTGCTGGAAACACCACCGCCCATTGCACTTCTTGTAGCCGTCAAGGCATCGACCCGAAATTGCTCGACGGCTTCCCCATCCTCGTGTATTCTGCCGTCAAACACCTCAAGCGTGGGAGTGCAGCGCTTGAGTGTGCCGTGTGCTTGGGCGAGTTCGATCACCACGACAGGCTCCGATTACTTCCGACATGTAACCATGTGTTTCACCCTGAATGCATCGACGCATGGTTGGCCTCCCATGTGACTTGCCCCGTTTGTCGCGCGAGGCTGACACCGGAGCACCACCGTGGCGGCAGTGGCCGCGATGATGTCGTGATAGTGATTCAGGATGAGGCAAATGCACATCAAGTGCTTGATGAAAGTTCTGAGAGTAGAAGAAGAACGGAGCTTAATTCAGGAGATCAAAGTAGTAGTAGTTTGGGTAGGTGTCATTCAACGGGTCACTCTCTGAATTTGGTTGAAACAGTAGGGAAGGACATAGAGAGGTATACTCTGAGGTTATCGGAGGATGTGAGGAAGCAGATTCTGGCGAATCACGGAGGAGGAATGCGGCGTTCCTTGAGCTATAATGTATTCCGGCCGCCGGGACGGCCAGGTGAAGGAAGCAGTGGAGAGCAATTTGTGCGTTGA 855 0.5322 MIKRVTLSHIVVFLLLSSAVVDAKSAPQPEAPGNPTRFPNWDPSFTPVIAALVCAFLFVVFFSVYLRHCSDTDLVVAGNTTAHCTSCSRQGIDPKLLDGFPILVYSAVKHLKRGSAALECAVCLGEFDHHDRLRLLPTCNHVFHPECIDAWLASHVTCPVCRARLTPEHHRGGSGRDDVVIVIQDEANAHQVLDESSESRRRTELNSGDQSSSSLGRCHSTGHSLNLVETVGKDIERYTLRLSEDVRKQILANHGGGMRRSLSYNVFRPPGRPGEGSSGEQFVR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1348 284 MobiDBLite consensus disorder prediction 191 220 - -
Prci1g1348 284 MobiDBLite consensus disorder prediction 206 220 - -
Prci1g1348 284 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Prci1g1348 284 SMART ring_2 120 161 IPR001841 -
Prci1g1348 284 CDD RING-H2_EL5-like 119 162 - -
Prci1g1348 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 172 - -
Prci1g1348 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 171 IPR013083 -
Prci1g1348 284 MobiDBLite consensus disorder prediction 191 205 - -
Prci1g1348 284 FunFam E3 ubiquitin-protein ligase ATL6 80 168 - -
Prci1g1348 284 MobiDBLite consensus disorder prediction 259 284 - -
Prci1g1348 284 Pfam Ring finger domain 119 162 IPR001841 -
Prci1g1348 284 SUPERFAMILY RING/U-box 104 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1348 Prci-Chr1 29609433 29610287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1348 11 253 Rapid Response to Elicitors AT3G05200 39.382 4.39e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1348 K10664 - pcin:129287042 233.032