Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1235 ATGGGGAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAATAGGCAAGTGACATTCGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCAGAAGTTGCTCTCATCGTCTTCTCCAATCGTGGCAAGCTTTATGAGTTCTGTAGCACTCCTAGGGGGTGGGCGTGTGTGCACACGGTAGATCTGGTGATAGTACATAGTCAGATGAAAATCTCATCGTTGTATTACTGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGTTATGGCGCTGTGGAAGTGAACAAACCAGCCAAGGAGCTTGAGACCAGGTACCGCGAATACTTGAAGCTGAAAGCAAGATATGAATCTCTCCAAAGGACACAAAGAAACCTTCTAGGGGAAGACTTGGATCCATTGAACTCAAAAGAATTGGAGCAGCTAGAGCGCCAACTTGATTCATCTTTAAAGCAAGTGAGGTCCATTAAGACTCAATTCATGCTGGACCAACTGAGCGATCTTCAAAATAAGGAGCAGATTTTGGTTGAAGCAAACAGATCTTTGACTATGAAATTTCTCTGCGTTGGAAATATTGGGGTTCACTCATACATTATCTAA 630 0.4317 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTPRGWACVHTVDLVIVHSQMKISSLYYCMLKTLERYQKCSYGAVEVNKPAKELETRYREYLKLKARYESLQRTQRNLLGEDLDPLNSKELEQLERQLDSSLKQVRSIKTQFMLDQLSDLQNKEQILVEANRSLTMKFLCVGNIGVHSYII 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1235 209 Coils Coil 109 129 - -
Prci1g1235 209 Coils Coil 149 169 - -
Prci1g1235 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 CDD MADS_MEF2_like 2 101 IPR033896 GO:0000977|GO:0045944
Prci1g1235 209 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Prci1g1235 209 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
Prci1g1235 209 Pfam K-box region 110 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci1g1235 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci1g1235 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Prci1g1235 209 ProSiteProfiles K-box domain profile. 112 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1235 Prci-Chr1 23800858 23807945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1235 1 207 MADS-box Gene Family AT5G15800 74.038 1.39e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci1g1235 K-box 3.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1235 K09264 - twl:120016964 291.197