Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1234 ATGGGGAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAATAGGCAAGTGACATTCGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCAGAAGTTGCTCTCATCGTCTTCTCCAATCGTGGCAAGCTTTATGAGTTCTGTAGCACTCCTAGGGGGTGGGCGTGTGTGCACACGGTAGATCTGGTGATAGTACATAGTCAGATGAAAATCTCATCGTTGTATTACTGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGTTATGGCGCTGTGGAAGTGAACAAACCAGCCAAGGAGCTTGAGACCAGGTACCGCGAATACTTGAAGCTGAAAGCAAGATATGAATCTCTCCAAAGGACACAAAGAAACCTTCTAGGGGAAGACTTGGATCCATTGAACTCAAAAGAATTGGAGCAGCTAGAGCGCCAACTTGATTCATCTTTAAAGCAAGTGAGGTCCATTAAGACTCAATTCATGCTGGACCAACTGAGCGATCTTCAAAATAAGGAGCAGATTTTGGTTGAAGCAAACAGATCTTTGACTATGAAATTGGAAGAAATCAATTCAAGAAACAACTACAGGCAATCTTGGGAAGATGGTGATCAAAGCATGCCATATGGTTCCCTGGATGCGAACTCTCAGGGCTTCTTCCAGCCTTTGGACTGCAATCCCACACTACAGATAGGGTACAATGCTGAGAGTTCAGATCAGATGACAGCAACAACACAATGTCAGCAAGCGAGTGGATTGATTCCTGGATGGATGCTTTAA 807 0.4411 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTPRGWACVHTVDLVIVHSQMKISSLYYCMLKTLERYQKCSYGAVEVNKPAKELETRYREYLKLKARYESLQRTQRNLLGEDLDPLNSKELEQLERQLDSSLKQVRSIKTQFMLDQLSDLQNKEQILVEANRSLTMKLEEINSRNNYRQSWEDGDQSMPYGSLDANSQGFFQPLDCNPTLQIGYNAESSDQMTATTQCQQASGLIPGWML 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1234 268 Coils Coil 109 129 - -
Prci1g1234 268 SUPERFAMILY SRF-like 2 68 IPR036879 GO:0003677|GO:0046983
Prci1g1234 268 Coils Coil 149 169 - -
Prci1g1234 268 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 CDD MADS_MEF2_like 2 101 IPR033896 GO:0000977|GO:0045944
Prci1g1234 268 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Prci1g1234 268 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Prci1g1234 268 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci1g1234 268 ProSiteProfiles K-box domain profile. 112 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci1g1234 268 Pfam K-box region 110 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1234 Prci-Chr1 23799254 23807945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1234 1 268 MADS-box Gene Family AT5G15800 64.808 1.99e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci1g1234 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1234 K09264 - qsa:O6P43_009196 398.282