Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1225 ATGCTCTTCTATGGTCCACCCGGCACTGGAAAGACCACAACTGCACTTGCGATTGCCCATCAGCTTTTCGGACCTGAGCTTTACAAGTCTAGGGTGCTGGAACTGAATGCAAGTGATGATCGTGGGATTAATGTTGTGCGGACAAAGATAAAGGATTTTGCTGCCGTGGCTGTTAGTACCAATCAGCGTAAGAGTGGTTATCGATGCCCGCCATATAAGATTATTATTCTAGATGAGGCAGATTCAATGACCGAAGATGCTCAGAATGCTCTGCGTCGTACAATGGAGACTTACTCTAAGGTTACAAGGTTCTTTTTTATATGCAATTACATTAGCAGGATTATAGAACCACTCGCTTCAAGGTGTGCAAAATTCAGATTTAAGCCACTGTCAGAAGAAATCATGAGCAGTCGAATACTGTACATTTGCAAAGAAGAAGGGCTTTATCTTGATTCTGGGGCTCTTTCAACCTTTAGTTCCATTTCTCAAGGAGATCTCCGTAGGGCTATTACATACTTGCAGTCAGCTGCCCGCTTATTTGGATCTTCAATTTCTTCAAAGGACCTGATTTCTGTCTCTGGGGTCATTGCAACAGAGGTTGTGCAGGCTTTTCTTGCAACCTGTAAAAGTTGTAATTTTGATTTAGCAAACAAGGAAGTTAATGATTTCATTGCTGAAGGATATCCAGTCTCTCAGTTACTGATTCAGTTATTTGAGGCCATTGTTGAAGCAGATGATATATCAGATGAACAGAAGGCAAGAATATCCAAGAAATTGGGTGAAGCTGATAAGTGCCTTGTTGATGGTGCTGATGAATATTTGCAGCTTCTTGATGTGGCCAGCAATACAATTCGAGCTTGTTGTAACATGCCAGAGGGATTTTCTTTCGAGGGCTAG 897 0.4203 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVSTNQRKSGYRCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLYLDSGALSTFSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIATEVVQAFLATCKSCNFDLANKEVNDFIAEGYPVSQLLIQLFEAIVEADDISDEQKARISKKLGEADKCLVDGADEYLQLLDVASNTIRACCNMPEGFSFEG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1225 298 CDD AAA 1 122 - -
Prci1g1225 298 Gene3D - 132 195 - -
Prci1g1225 298 FunFam Replication factor C subunit 4 132 195 - -
Prci1g1225 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 177 IPR027417 -
Prci1g1225 298 SUPERFAMILY post-AAA+ oligomerization domain-like 198 281 IPR008921 GO:0003677|GO:0006260
Prci1g1225 298 Gene3D - 1 129 IPR027417 -
Prci1g1225 298 CDD HLD_clamp_RFC 130 189 - -
Prci1g1225 298 FunFam Replication factor C subunit 4 196 285 - -
Prci1g1225 298 Pfam ATPase family associated with various cellular activities (AAA) 1 128 IPR003959 GO:0005524|GO:0016887
Prci1g1225 298 FunFam Replication factor C subunit 2 1 129 - -
Prci1g1225 298 SMART AAA_5 1 130 IPR003593 GO:0016887
Prci1g1225 298 Gene3D - 196 285 - -
Prci1g1225 298 Pfam Replication factor C C-terminal domain 199 280 IPR013748 -
Prci1g1225 298 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1225 Prci-Chr1 23595995 23606185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1225 1 294 Core DNA Replication Machinery Family AT1G21690 76.610 2.71e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1225 K10755 - jre:109008893 513.072