Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1166 ATGGTTTTTATGACAGTCATTATTATTCATTTTGGAAAAGACAGCCAATTGCCTATGTTTAATATTGTCAAATTTTGTGGGATCTTTGTTGCTGTGCAAGCCAATTTTCCACCATCATTAATCCCATATGCTGCATTGAGAATTTGTCATTCTGAGACAACTGTGGCTCAAAATGCTTTGGGTAAAAATTTGAAATTGTCACCGACCAGCATGCAAAGTAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAAGTCATTGCCACCATATGAAGCTGCCACTAAGCTGAAAGCTGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTGGCTTATGCAAATCATCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAAAAAAGAAAGGAAATTATTGAGTCATTTAGAGAACAAAGGCATTATCAGGCCAGATGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGTGAAGCTTATTAATCATTTTAAGCAAATTCATGAGCGTGAGCATATAAAAAGATTGAACACGATAGAGTCAGCAAAGGGGAATAGGAGGGTGAAGTTGGTTGCCAAGTATTCAATGAAAATGGAGAAGTATAAGAATGCAGCAAGGAGCATTTTGACTCCTAAAGTGGGTTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTCTTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGTCACATGGTAGATGTGATGGATAATATGAAGGTTGAGTGTGTGGTCCTTGTTTCAGATGATTCTGATTTTGTTGATGTATTAAAGGAGGCAAAATTACGATGTCTCAAGATAGTTGTCGTTGGAGATGCTAATAATGGAACCTTGAAGAGGACTGCTGATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGAAAGGCAAAGGAGGCAGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAATGAAATGCAGCCTGGATGATATGGTTGCTGAGGCTATTAAGGATGAAGATATTAGTGATACCTGTGATGAAGTTGATGATGCCTATAGCAATAAAGAAGATTCAAATGCTTGGTGGGAATTGGATACTGATGATGAATTCATAAGTAAACAATCAGGAAAATAG 1203 0.3815 MVFMTVIIIHFGKDSQLPMFNIVKFCGIFVAVQANFPPSLIPYAALRICHSETTVAQNALGKNLKLSPTSMQSRVGIFWDLDNKPPKSLPPYEAATKLKAAASHFGVVKHMVAYANHHTFSHVPQNVREQKKERKLLSHLENKGIIRPDEPYLCRVCGRKFYTNVKLINHFKQIHEREHIKRLNTIESAKGNRRVKLVAKYSMKMEKYKNAARSILTPKVGYGLADEIKHAGFWVRTVLDKPQAADIALKGHMVDVMDNMKVECVVLVSDDSDFVDVLKEAKLRCLKIVVVGDANNGTLKRTADAAFSWEEILMGKAKEAVSVVEKWKDRDILKRLEWTYNPEVEKMKCSLDDMVAEAIKDEDISDTCDEVDDAYSNKEDSNAWWELDTDDEFISKQSGK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1166 400 Pfam NYN domain 226 304 IPR021139 GO:0004540
Prci1g1166 400 Gene3D - 68 314 - -
Prci1g1166 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 180 IPR013087 -
Prci1g1166 400 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 68 396 - -
Prci1g1166 400 SUPERFAMILY beta-beta-alpha zinc fingers 148 178 IPR036236 -
Prci1g1166 400 ProSitePatterns Zinc finger C2H2 type domain signature. 154 175 IPR013087 -
Prci1g1166 400 CDD PIN_LabA-like 162 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1166 Prci-Chr1 19356300 19360359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1166 54 398 C2H2 Transcription Factor Family AT4G12240 58.263 2.84e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g1166 NYN 6.8e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1166 - - lja:Lj3g3v3326020.1 520.005