Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1146 ATGCCATTGCTCAGCACAATATCAGATGGCTTGTCATGGGAGCTGCAGGAGAAGGATATCAGTCAGGTAAACTGGCAGATGAAGAGACGAAGAAAGCTGTTCTTGTACTTGAGCAAGCATCAGTACCCTGTAATATTTGGTTTATTTACAAGGGCAACCTCATATGTACAAGGCTTCTTCTTTCTTGAGACCACAATAGGAGTTTCCTCAGGTTTACAACCTAACATGCCAGTTTCCTTGAGAAGATCAAATTGTAAACATATATCAGAAATTGAGACTAGTCCATCATTGTTGGTGATTAGTTCGAATACAGGAGGCAAAAAATCTAAGATCAATTCTGAATGTACTGCTAATTCACAGAAATATTTAGATGCTGAAAATATGGAAGGAATGCTCAGAAATTTTAGTTGCCATTGTTCCATAGAATCAACACAATCAAGTACTATGTTGACAGATTTGCTGTCTCTTAAGGAGGAAAGTGATGTGCACAATGATGCCAGAGAACAAGGTGAAAGACTGGAACTAGCTAATGTAGATGCTACAAGCTTTAAAACAAAGGAACCTATAGGAGTAGAGGAGAGCAGCAGCGTAGAAGATGACAATACTATGGAGGCTGAAGCATTAGAAAGCTTGTGTGCTATTGAGATTAGTCGAAGAAGAGAGCTTGAAGAACTATTGGCTCAGGAAAAGTATGAATTACTAAAACTGAAAGATCAACAAGATGAGACCATGGTTGAACTGCGAATGATCCAAGACCAAAATTCAGCACTTAACAGCCAAGTTGTTGATTCCCGGGCCATGGTAACAGAGTTGGAGGAGAAAATTTTATCTGCAGTGGAACTCTTGATTAGCTTCAAGGAAAAACGAGATAAGTTAAGGATTGAGCATGCAAATGCAGTCAGGGAAGTCAACAAGTTGAAGTTTGTGAATGCAGATTCTGAATATCCACATGAAGCAGAATTTCCCACATTTTCATTCTTAGAGATTAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGATATGGAAGTGTTTACAAAGGATTGCTTCACAATATGCAAGTTGCTGTAAGGATGTTACCTTCTTATGGCTGTCAGGGCCAACTGGAGTTCCAACATCAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACATTGTCACACTGATTGGAAGCTGCCCGGAAACTAGATCGCTGGTCTATGATTACCTTAACAATGGCAGCCTTGAGGAACACCTTGCCCGCAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGCAAGCCTTGTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTGAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTGGTCCAGCGCAGTGGGCATTCAGCTGATAGTAACACAACAGTCAACAACAGAAATGAAAGTTCGGTGTATGTGGATACAGAATTTCTTATCACTGCAAAGCTCGTGCCAGAATCCGATGTGTATTCGTTCGGAATCATATTGTTACAGCTTTTAACAGGAAGACCTATTTCGGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAACCTAAAAGCGGTATTGGACATTTCAGCGGGAGAATGGCCACTTTATCAGGTTGAACAGCTGGCATATTTGGCATTGAGATGTTCTGAGAAGACCCGGATGAATCGGCCAGACCTTGTATCAGAAATCTGGAGTGTTCTTGGACCGTTAAAAACTTCATGTAGTAACACGTCACCATATTTGACTTCCAAGAAGCTTCATCGTCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTTTATAGCTGCAGATGGCTTTACGTATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAATACTTCGCCAATGACAAACCTTCAGCTTGAACACACCAACCTGGTGCCTAACTATGCGTTACTCAATGCCATACAGGAGTGGCAGCAACTGCAATGA 2070 0.4116 MPLLSTISDGLSWELQEKDISQVNWQMKRRRKLFLYLSKHQYPVIFGLFTRATSYVQGFFFLETTIGVSSGLQPNMPVSLRRSNCKHISEIETSPSLLVISSNTGGKKSKINSECTANSQKYLDAENMEGMLRNFSCHCSIESTQSSTMLTDLLSLKEESDVHNDAREQGERLELANVDATSFKTKEPIGVEESSSVEDDNTMEAEALESLCAIEISRRRELEELLAQEKYELLKLKDQQDETMVELRMIQDQNSALNSQVVDSRAMVTELEEKILSAVELLISFKEKRDKLRIEHANAVREVNKLKFVNADSEYPHEAEFPTFSFLEINEATNDFDPSWKIGEGRYGSVYKGLLHNMQVAVRMLPSYGCQGQLEFQHQVEVLSRVRHPNIVTLIGSCPETRSLVYDYLNNGSLEEHLARKDKTPLPWQIRISIAADICSALIFLHSSKPCIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVNNRNESSVYVDTEFLITAKLVPESDVYSFGIILLQLLTGRPISGIVRDTKCALEKENLKAVLDISAGEWPLYQVEQLAYLALRCSEKTRMNRPDLVSEIWSVLGPLKTSCSNTSPYLTSKKLHRPPSHFVCPIFQEVMKDPFIAADGFTYEEDAIRGWLDSGHNTSPMTNLQLEHTNLVPNYALLNAIQEWQQLQ 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1146 689 ProSiteProfiles Protein kinase domain profile. 336 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1146 689 SUPERFAMILY RING/U-box 616 686 - -
Prci1g1146 689 Pfam U-box domain 620 686 IPR003613 GO:0004842|GO:0016567
Prci1g1146 689 Coils Coil 219 239 - -
Prci1g1146 689 ProSiteProfiles U-box domain profile. 618 689 IPR003613 GO:0004842|GO:0016567
Prci1g1146 689 Pfam Protein tyrosine and serine/threonine kinase 341 589 IPR001245 GO:0004672|GO:0006468
Prci1g1146 689 Gene3D Transferase(Phosphotransferase) domain 1 409 604 - -
Prci1g1146 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 689 IPR013083 -
Prci1g1146 689 PANTHER OS02G0152300 PROTEIN 125 684 - -
Prci1g1146 689 CDD RING-Ubox_WDSUB1-like 620 675 - -
Prci1g1146 689 Gene3D Phosphorylase Kinase; domain 1 307 408 - -
Prci1g1146 689 SMART Ubox_2 622 685 IPR003613 GO:0004842|GO:0016567
Prci1g1146 689 SUPERFAMILY Protein kinase-like (PK-like) 314 589 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1146 Prci-Chr1 18526624 18595925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1146 198 686 U-box Gene Family AT3G49060 53.722 1.68e-172 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci1g1146 PK_Tyr_Ser-Thr 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1146 - - pcin:129304798 1197.57