Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1145 ATGCCATTGCTCAGCACAATATCAGATGGCTTGTCATGGGAGCTGCAGGAGAAGGATATCAGTCAGGTAAACTGGCAGATGAAGAGACGAAGAAAGCTGTTCTTGTACTTGAGCAAGCATCAGTACCCTGTAATATTTGGTTTATTTACAAGGGCAACCTCATATGTACAAGATTGTAAACATATATCAGAAATTGAGACTAGTCCATCATTGTTGGTGATTAGTTCGAATACAGGAGGCAAAAAATCTAAGATCAATTCTGAATGTACTGCTAATTCACAGAAATATTTAGATGCTGAAAATATGGAAGGAATGCTCAGAAATTTTAGTTGCCATTGTTCCATAGAATCAACACAATCAAGTACTATGTTGACAGATTTGCTGTCTCTTAAGGAGGAAAGTGATGTGCACAATGATGCCAGAGAACAAGGTGAAAGACTGGAACTAGCTAATGTAGATGCTACAAGCTTTAAAACAAAGGAACCTATAGGAGTAGAGGAGAGCAGCAGCGTAGAAGATGACAATACTATGGAGGCTGAAGCATTAGAAAGCTTGTGTGCTATTGAGATTAGTCGAAGAAGAGAGCTTGAAGAACTATTGGCTCAGGAAAAGTATGAATTACTAAAACTGAAAGATCAACAAGATGAGACCATGGTTGAACTGCGAATGATCCAAGACCAAAATTCAGCACTTAACAGCCAAGTTGTTGATTCCCGGGCCATGGTAACAGAGTTGGAGGAGAAAATTTTATCTGCAGTGGAACTCTTGATTAGCTTCAAGGAAAAACGAGATAAGTTAAGGATTGAGCATGCAAATGCAGTCAGGGAAGTCAACAAGTTGAAGTTTGTGAATGCAGATTCTGAATATCCACATGAAGCAGAATTTCCCACATTTTCATTCTTAGAGATTAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGATATGGAAGTGTTTACAAAGGATTGCTTCACAATATGCAAGTTGCTGTAAGGATGTTACCTTCTTATGGCTGTCAGGGCCAACTGGAGTTCCAACATCAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACATTGTCACACTGATTGGAAGCTGCCCGGAAACTAGATCGCTGGTCTATGATTACCTTAACAATGGCAGCCTTGAGGAACACCTTGCCCGCAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGCAAGCCTTGTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTGAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTGGTCCAGCGCAGTGGGCATTCAGCTGATAGTAACACAACAGTCAACAACAGAAATGAAAGTTCGGTGTATGTGGATACAGAATTTCTTATCACTGCAAAGCTCGTGCCAGAATCCGATGTGTATTCGTTCGGAATCATATTGTTACAGCTTTTAACAGGAAGACCTATTTCGGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAACCTAAAAGCGGTATTGGACATTTCAGCGGGAGAATGGCCACTTTATCAGGTTGAACAGCTGGCATATTTGGCATTGAGATGTTCTGAGAAGACCCGGATGAATCGGCCAGACCTTGTATCAGAAATCTGGAGTGTTCTTGGACCGTTAAAAACTTCATGTAGTAACACGTCACCATATTTGACTTCCAAGAAGCTTCATCGTCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTTTATAGCTGCAGATGGCTTTACGTATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAATACTTCGCCAATGACAAACCTTCAGCTTGAACACACCAACCTGGTGCCTAACTATGCGTTACTCAATGCCATACAGGAGTGGCAGCAACTGCAATGA 1992 0.4116 MPLLSTISDGLSWELQEKDISQVNWQMKRRRKLFLYLSKHQYPVIFGLFTRATSYVQDCKHISEIETSPSLLVISSNTGGKKSKINSECTANSQKYLDAENMEGMLRNFSCHCSIESTQSSTMLTDLLSLKEESDVHNDAREQGERLELANVDATSFKTKEPIGVEESSSVEDDNTMEAEALESLCAIEISRRRELEELLAQEKYELLKLKDQQDETMVELRMIQDQNSALNSQVVDSRAMVTELEEKILSAVELLISFKEKRDKLRIEHANAVREVNKLKFVNADSEYPHEAEFPTFSFLEINEATNDFDPSWKIGEGRYGSVYKGLLHNMQVAVRMLPSYGCQGQLEFQHQVEVLSRVRHPNIVTLIGSCPETRSLVYDYLNNGSLEEHLARKDKTPLPWQIRISIAADICSALIFLHSSKPCIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVNNRNESSVYVDTEFLITAKLVPESDVYSFGIILLQLLTGRPISGIVRDTKCALEKENLKAVLDISAGEWPLYQVEQLAYLALRCSEKTRMNRPDLVSEIWSVLGPLKTSCSNTSPYLTSKKLHRPPSHFVCPIFQEVMKDPFIAADGFTYEEDAIRGWLDSGHNTSPMTNLQLEHTNLVPNYALLNAIQEWQQLQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1145 663 ProSiteProfiles U-box domain profile. 592 663 IPR003613 GO:0004842|GO:0016567
Prci1g1145 663 ProSiteProfiles Protein kinase domain profile. 310 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1145 663 Pfam U-box domain 594 660 IPR003613 GO:0004842|GO:0016567
Prci1g1145 663 Pfam Protein tyrosine and serine/threonine kinase 315 563 IPR001245 GO:0004672|GO:0006468
Prci1g1145 663 SUPERFAMILY Protein kinase-like (PK-like) 288 563 IPR011009 -
Prci1g1145 663 CDD RING-Ubox_WDSUB1-like 594 649 - -
Prci1g1145 663 Gene3D Phosphorylase Kinase; domain 1 281 382 - -
Prci1g1145 663 PANTHER OS02G0152300 PROTEIN 110 658 - -
Prci1g1145 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 663 IPR013083 -
Prci1g1145 663 SMART Ubox_2 596 659 IPR003613 GO:0004842|GO:0016567
Prci1g1145 663 Gene3D Transferase(Phosphotransferase) domain 1 383 578 - -
Prci1g1145 663 SUPERFAMILY RING/U-box 590 660 - -
Prci1g1145 663 Coils Coil 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1145 Prci-Chr1 18526624 18595925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1145 172 660 U-box Gene Family AT3G49060 53.722 7.72e-173 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci1g1145 PK_Tyr_Ser-Thr 1.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1145 - - pcin:129304798 1199.11