Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1144 ATGGGAAGCACTGAAGTGATTGAAGGAGAGCGCGTGGAGGATGTTGGATTGGAAGAGACTGTATATGTTGCAGTGGGGAAGAACATAGAGAAGAGCCAACAGCTTCTGCACTGGGCATTGGATAATTGTGCCAAAAAGAAGATATGCGTGCTTCATGTTCATCGGCCTGAGCGTATATATTCTTTGACAGATGCTAAACCCAACGGGATTGAACCAGAAGGAAATAAAATAAAGGCATTCCAGGAACAGGAAAGGCAACAAGTGCATGAACTTTTAGATCAATATCTTCTCACTCTTACCCTGGAAGGGGTAGAGGCCAATAAAATGTTGATTGAAATGGATAGTATTGAGAAAGGAATTGAACATGCCATTGCTCAGCACAATATCAGATGGCTTGTCATGGGAGCTGCAGGAGAAGGATATCAGTCAGGCGCAGATTGTAAACATATATCAGAAATTGAGACTAGTCCATCATTGTTGGTGATTAGTTCGAATACAGGAGGCAAAAAATCTAAGATCAATTCTGAATGTACTGCTAATTCACAGAAATATTTAGATGCTGAAAATATGGAAGGAATGCTCAGAAATTTTAGTTGCCATTGTTCCATAGAATCAACACAATCAAGTACTATGTTGACAGATTTGCTGTCTCTTAAGGAGGAAAGTGATGTGCACAATGATGCCAGAGAACAAGGTGAAAGACTGGAACTAGCTAATGTAGATGCTACAAGCTTTAAAACAAAGGAACCTATAGGAGTAGAGGAGAGCAGCAGCGTAGAAGATGACAATACTATGGAGGCTGAAGCATTAGAAAGCTTGTGTGCTATTGAGATTAGTCGAAGAAGAGAGCTTGAAGAACTATTGGCTCAGGAAAAGTATGAATTACTAAAACTGAAAGATCAACAAGATGAGACCATGGTTGAACTGCGAATGATCCAAGACCAAAATTCAGCACTTAACAGCCAAGTTGTTGATTCCCGGGCCATGGTAACAGAGTTGGAGGAGAAAATTTTATCTGCAGTGGAACTCTTGATTAGCTTCAAGGAAAAACGAGATAAGTTAAGGATTGAGCATGCAAATGCAGTCAGGGAAGTCAACAAGTTGAAGTTTGTGAATGCAGATTCTGAATATCCACATGAAGCAGAATTTCCCACATTTTCATTCTTAGAGATTAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGATATGGAAGTGTTTACAAAGGATTGCTTCACAATATGCAAGTTGCTGTAAGGATGTTACCTTCTTATGGCTGTCAGGGCCAACTGGAGTTCCAACATCAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACATTGTCACACTGATTGGAAGCTGCCCGGAAACTAGATCGCTGGTCTATGATTACCTTAACAATGGCAGCCTTGAGGAACACCTTGCCCGCAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGCAAGCCTTGTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTGAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTGGTCCAGCGCAGTGGGCATTCAGCTGATAGTAACACAACAGTCAACAACAGAAATGAAAGTTCGGTGTATGTGGATACAGAATTTCTTATCACTGCAAAGCTCGTGCCAGAATCCGATGTGTATTCGTTCGGAATCATATTGTTACAGCTTTTAACAGGAAGACCTATTTCGGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAACCTAAAAGCGGTATTGGACATTTCAGCGGGAGAATGGCCACTTTATCAGGTTGAACAGCTGGCATATTTGGCATTGAGATGTTCTGAGAAGACCCGGATGAATCGGCCAGACCTTGTATCAGAAATCTGGAGTGTTCTTGGACCGTTAAAAACTTCATGTAGTAACACGTCACCATATTTGACTTCCAAGAAGCTTCATCGTCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTTTATAGCTGCAGATGGCTTTACGTATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAATACTTCGCCAATGACAAACCTTCAGCTTGAACACACCAACCTGGTGCCTAACTATGCGTTACTCAATGCCATACAGGAGTGGCAGCAACTGCAATGA 2256 0.4153 MGSTEVIEGERVEDVGLEETVYVAVGKNIEKSQQLLHWALDNCAKKKICVLHVHRPERIYSLTDAKPNGIEPEGNKIKAFQEQERQQVHELLDQYLLTLTLEGVEANKMLIEMDSIEKGIEHAIAQHNIRWLVMGAAGEGYQSGADCKHISEIETSPSLLVISSNTGGKKSKINSECTANSQKYLDAENMEGMLRNFSCHCSIESTQSSTMLTDLLSLKEESDVHNDAREQGERLELANVDATSFKTKEPIGVEESSSVEDDNTMEAEALESLCAIEISRRRELEELLAQEKYELLKLKDQQDETMVELRMIQDQNSALNSQVVDSRAMVTELEEKILSAVELLISFKEKRDKLRIEHANAVREVNKLKFVNADSEYPHEAEFPTFSFLEINEATNDFDPSWKIGEGRYGSVYKGLLHNMQVAVRMLPSYGCQGQLEFQHQVEVLSRVRHPNIVTLIGSCPETRSLVYDYLNNGSLEEHLARKDKTPLPWQIRISIAADICSALIFLHSSKPCIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVNNRNESSVYVDTEFLITAKLVPESDVYSFGIILLQLLTGRPISGIVRDTKCALEKENLKAVLDISAGEWPLYQVEQLAYLALRCSEKTRMNRPDLVSEIWSVLGPLKTSCSNTSPYLTSKKLHRPPSHFVCPIFQEVMKDPFIAADGFTYEEDAIRGWLDSGHNTSPMTNLQLEHTNLVPNYALLNAIQEWQQLQ 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1144 751 SMART Ubox_2 684 747 IPR003613 GO:0004842|GO:0016567
Prci1g1144 751 CDD RING-Ubox_WDSUB1-like 682 737 - -
Prci1g1144 751 SUPERFAMILY RING/U-box 678 748 - -
Prci1g1144 751 PANTHER OS02G0152300 PROTEIN 20 746 - -
Prci1g1144 751 Pfam U-box domain 682 748 IPR003613 GO:0004842|GO:0016567
Prci1g1144 751 Pfam Protein tyrosine and serine/threonine kinase 403 651 IPR001245 GO:0004672|GO:0006468
Prci1g1144 751 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 141 - -
Prci1g1144 751 Pfam Universal stress protein family 21 140 IPR006016 -
Prci1g1144 751 SUPERFAMILY Protein kinase-like (PK-like) 376 651 IPR011009 -
Prci1g1144 751 Gene3D Transferase(Phosphotransferase) domain 1 471 666 - -
Prci1g1144 751 Gene3D Phosphorylase Kinase; domain 1 369 470 - -
Prci1g1144 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 751 IPR013083 -
Prci1g1144 751 Coils Coil 281 301 - -
Prci1g1144 751 Gene3D HUPs 20 151 IPR014729 -
Prci1g1144 751 ProSiteProfiles Protein kinase domain profile. 398 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1144 751 ProSiteProfiles U-box domain profile. 680 751 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1144 Prci-Chr1 18526624 18597244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1144 77 748 U-box Gene Family AT3G49060 42.934 2.30e-180 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci1g1144 PK_Tyr_Ser-Thr 2.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1144 - - pcin:129304798 1466.06