Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1142 ATGGGAAGCACTGAAGTGATTGAAGGAGAGCGCGTGGAGGATGTTGGATTGGAAGAGACTGTATATGTTGCAGTGGGGAAGAACATAGAGAAGAGCCAACAGCTTCTGCACTGGGCATTGGATAATTGTGCCAAAAAGAAGATATGCGTGCTTCATGTTCATCGGCCTGAGCGTATATATTCTTTGACAGATGCTAAACCCAACGGGATTGAACCAGAAGGAAATAAAATAAAGGCATTCCAGGAACAGGAAAGGCAACAAGTGCATGAACTTTTAGATCAATATCTTCTCACTCTTACCCTGGAAGGGGTAGAGGCCAATAAAATGTTGATTGAAATGGATAGTATTGAGAAAGGAATTGAACATGCCATTGCTCAGCACAATATCAGATGGCTTGTCATGGGAGCTGCAGGAGAAGGATATCAGTCAGGTAAACTGGCAGATGAAGAGACGAAGAAAGCTGTTCTTGTACTTGAGCAAGCATCAGTACCCTGTAATATTTGGTTTATTTACAAGGGCAACCTCATATGTACAAGCGCAGATTGTAAACATATATCAGAAATTGAGACTAGTCCATCATTGTTGGTGATTAGTTCGAATACAGGAGGCAAAAAATCTAAGATCAATTCTGAATGTACTGCTAATTCACAGAAATATTTAGATGCTGAAAATATGGAAGGAATGCTCAGAAATTTTAGTTGCCATTGTTCCATAGAATCAACACAATCAAGTACTATGTTGACAGATTTGCTGTCTCTTAAGGAGGAAAGTGATGTGCACAATGATGCCAGAGAACAAGGTGAAAGACTGGAACTAGCTAATGTAGATGCTACAAGCTTTAAAACAAAGGAACCTATAGGAGTAGAGGAGAGCAGCAGCGTAGAAGATGACAATACTATGGAGGCTGAAGCATTAGAAAGCTTGTGTGCTATTGAGATTAGTCGAAGAAGAGAGCTTGAAGAACTATTGGCTCAGGAAAAGTATGAATTACTAAAACTGAAAGATCAACAAGATGAGACCATGGTTGAACTGCGAATGATCCAAGACCAAAATTCAGCACTTAACAGCCAAGTTGTTGATTCCCGGGCCATGGTAACAGAGTTGGAGGAGAAAATTTTATCTGCAGTGGAACTCTTGATTAGCTTCAAGGAAAAACGAGATAAGTTAAGGATTGAGCATGCAAATGCAGTCAGGGAAGTCAACAAGTTGAAGTTTGTGAATGCAGATTCTGAATATCCACATGAAGCAGAATTTCCCACATTTTCATTCTTAGAGATTAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGATATGGAAGTGTTTACAAAGGATTGCTTCACAATATGCAAGTTGCTGTAAGGATGTTACCTTCTTATGGCTGTCAGGGCCAACTGGAGTTCCAACATCAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACATTGTCACACTGATTGGAAGCTGCCCGGAAACTAGATCGCTGGTCTATGATTACCTTAACAATGGCAGCCTTGAGGAACACCTTGCCCGCAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGCAAGCCTTGTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTGAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTGGTCCAGCGCAGTGGGCATTCAGCTGATAGTAACACAACAGTCAACAACAGAAATGAAAGTTCGGTGTATGTGGATACAGAATTTCTTATCACTGCAAAGCTCGTGCCAGAATCCGATGTGTATTCGTTCGGAATCATATTGTTACAGCTTTTAACAGGAAGACCTATTTCGGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAACCTAAAAGCGGTATTGGACATTTCAGCGGGAGAATGGCCACTTTATCAGGTTGAACAGCTGGCATATTTGGCATTGAGATGTTCTGAGAAGACCCGGATGAATCGGCCAGACCTTGTATCAGAAATCTGGAGTGTTCTTGGACCGTTAAAAACTTCATGTAGTAACACGTCACCATATTTGACTTCCAAGAAGCTTCATCGTCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTTTATAGCTGCAGATGGCTTTACGTATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAATACTTCGCCAATGACAAACCTTCAGCTTGAACACACCAACCTGGTGCCTAACTATGCGTTACTCAATGCCATACAGGAGTGGCAGCAACTGCAATGA 2361 0.4142 MGSTEVIEGERVEDVGLEETVYVAVGKNIEKSQQLLHWALDNCAKKKICVLHVHRPERIYSLTDAKPNGIEPEGNKIKAFQEQERQQVHELLDQYLLTLTLEGVEANKMLIEMDSIEKGIEHAIAQHNIRWLVMGAAGEGYQSGKLADEETKKAVLVLEQASVPCNIWFIYKGNLICTSADCKHISEIETSPSLLVISSNTGGKKSKINSECTANSQKYLDAENMEGMLRNFSCHCSIESTQSSTMLTDLLSLKEESDVHNDAREQGERLELANVDATSFKTKEPIGVEESSSVEDDNTMEAEALESLCAIEISRRRELEELLAQEKYELLKLKDQQDETMVELRMIQDQNSALNSQVVDSRAMVTELEEKILSAVELLISFKEKRDKLRIEHANAVREVNKLKFVNADSEYPHEAEFPTFSFLEINEATNDFDPSWKIGEGRYGSVYKGLLHNMQVAVRMLPSYGCQGQLEFQHQVEVLSRVRHPNIVTLIGSCPETRSLVYDYLNNGSLEEHLARKDKTPLPWQIRISIAADICSALIFLHSSKPCIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVNNRNESSVYVDTEFLITAKLVPESDVYSFGIILLQLLTGRPISGIVRDTKCALEKENLKAVLDISAGEWPLYQVEQLAYLALRCSEKTRMNRPDLVSEIWSVLGPLKTSCSNTSPYLTSKKLHRPPSHFVCPIFQEVMKDPFIAADGFTYEEDAIRGWLDSGHNTSPMTNLQLEHTNLVPNYALLNAIQEWQQLQ 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1142 786 SUPERFAMILY RING/U-box 713 783 - -
Prci1g1142 786 SUPERFAMILY Protein kinase-like (PK-like) 411 686 IPR011009 -
Prci1g1142 786 Gene3D HUPs 20 165 IPR014729 -
Prci1g1142 786 Gene3D Phosphorylase Kinase; domain 1 404 505 - -
Prci1g1142 786 Pfam U-box domain 717 783 IPR003613 GO:0004842|GO:0016567
Prci1g1142 786 ProSiteProfiles Protein kinase domain profile. 433 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1142 786 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 144 - -
Prci1g1142 786 Pfam Universal stress protein family 21 142 IPR006016 -
Prci1g1142 786 ProSiteProfiles U-box domain profile. 715 786 IPR003613 GO:0004842|GO:0016567
Prci1g1142 786 CDD RING-Ubox_WDSUB1-like 717 772 - -
Prci1g1142 786 Coils Coil 316 336 - -
Prci1g1142 786 SMART Ubox_2 719 782 IPR003613 GO:0004842|GO:0016567
Prci1g1142 786 Pfam Protein tyrosine and serine/threonine kinase 438 686 IPR001245 GO:0004672|GO:0006468
Prci1g1142 786 PANTHER OS02G0152300 PROTEIN 20 781 - -
Prci1g1142 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 786 IPR013083 -
Prci1g1142 786 Gene3D Transferase(Phosphotransferase) domain 1 506 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1142 Prci-Chr1 18526624 18597245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1142 77 783 U-box Gene Family AT3G49060 44.818 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci1g1142 PK_Tyr_Ser-Thr 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1142 - - pcin:129304798 1554.27