Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1120 ATGGAGCAGAAATGCGCTTTGTTGTCAGCATTGAGCGTAGGGGTTGGTCTGGGAGTGGGGCTTGGATTGAGTTCAGGGCAGGTGGTTCAGAAATGGGTTGGAAGGAATCGTGAGCTCTCTGGTGAGCAGATTGAGCTGGAGCTTTTGAGGCTGGTGATTGATGGCAAGGAATGCAAGGAAACTTTTGATGAGTTTCCTTACTATTTAAGTAAAAGAACACGTGAGTTATTGACAAATGCTGCATTTGTTCATTTAAAACAACTTCACTTTTCGAAACACACCCGTAACCTGTCACCAGCAAGCAGGGCAATTCTGCTTTCTGGACCTACAGAACTTTACATGCAAAAACTTGCCAAGGCTTTAGCGCAACACTTTGAGTCAAAGTTGCTGCTGCTAGATATCCCTGACTTCTCTTTCAAGGTGGAAAGCAAACATGGATGTGCAAAAAAAGAACCATCTTTTCAAAGGTCCTTATCTGAGGTGACTCTTGAGCGAGTGTCCAGTCTTTTTGGTTCCTTTTCAGTTCTCCCTTCAACTGGAAAAACTAAAGGCATTTTACGCGCACACAGTAATAGTACTGGAAGTTCCAATGCATCTCCAAAACTTAGTAGCAATGCCTCTACTGCATCTGATATGAGTCCCTTGAAGAACACAAGTAGCTTGTGTCTTGATGAAAAACTCTTTATACAGTCGCTTTACAAGGTCTTGGTATCTGTCTCAGAAAAAAGTTCCATCATTTTATACATTAGGGATGCTGAGAAGATTTTCCTCCAATCAGAACGGCTGTATAATTTGTTTCATAAAATGCTTGAGAAACTTTCAGGGCCAGTGATGGTAATTGGTTCCCAGATATTAGATTCGGGAGTTGATGAAAGTCCCGCAACATTATTTCCTTACAACATTGGGGTTAAACCACCAGAAGATGATTGCAACGCCCTACAAGAAGATAATATGAAAATAATTCAGTTTCAAGATAACAAAAAACACATTGCTGAAGTACTTGCAGCCAATGATATTGAATGTAATGACTTGAATTCAATCTGCCATGCAGACACAAGGGTACTAAGTAAATATATTGAAGAAATTGTGGTATCTGCAATACATTACTACTTGATGAATACCACGGATCCAGAATACCGAAATGGGAAGCTAGTAATATCATCCGAGAGTTTGTCCCATGGTTTGAATCTATTTCAAGAAGGCAATAGTAGCTCTGAGGACACCCTGAAGCTGGAGACCAGTGGAAAAAAGGAAGTTCCTCCTGACAATGAGTTTGAGAAGCACATTAGACCAGAGGTCATCCCTGCAAATGAGATCGGAGTTACATTTGCAGATATTGGTGCATTAGATGAAATTAAAGAGTCACTCCAAGAGCTGGTCATGCTTCCTCTTCGAAGGCCAGATCTCTTCAAAGGTGGTCTTCTTAAACCTTGTAGGGGTATACTGCTCTTTGGACCTCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGCTTTATCAATATCTCAATGTCTACCATCACTTCAAAATGGTTTGGAGAAGACGAGAAAAATGTCCGAGCTCTGTTCACATTGGCAGCAAAGGTAGCCCCAACTATTATTTTTGTTGATGAGGTTGATAGCATGCTTGGGCAGCGAACAAGAGTTGGAGAACATGAGGCGATGAGGAAGATTAAAAATGAATTCATGATGCACTGGGATGGTCTATTGACAAAACCTGGGGAGCAAATTCTAGTCCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATACGACGGTTTGAGCGAAGAATCATGGTTGGCCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTACTAGCTAAGGAAAAGACTGAAAATTTAGACTTCAAAGATCTTGCAATCATGACAGAAGGATACAGTGGAAGTGATATTAAGCATTTGTGCACAACTGCTGCTTATCGACCTGTTAGGGAGCTCATGAAGCAGGAGAGATTAAAAGATATGGAAAAGAATAAAAAAGCTGCTGCAGAACAATGCTCAGAGGATGCATCAGATACTAAGGGGGATGGAGAAGAGCGAGTAATTACCTTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGAGTCAGGGTACAATAAGAATACTACACTCTCATGCCATTAGCCGTGGTGGAAGGTTTGTGTGCCATGGCCAACAATGCCAGACTTCATATTTTCACTTGTTCTTTTACCCCCTTTTTTACTTGGAATCAATTCCTTTTAGTTTAAATTTACTTCCTAAATTTATTTTACAAAGTTTTTTGGGTTCAAATGGATATTGTTTTACTTGA 2355 0.4081 MEQKCALLSALSVGVGLGVGLGLSSGQVVQKWVGRNRELSGEQIELELLRLVIDGKECKETFDEFPYYLSKRTRELLTNAAFVHLKQLHFSKHTRNLSPASRAILLSGPTELYMQKLAKALAQHFESKLLLLDIPDFSFKVESKHGCAKKEPSFQRSLSEVTLERVSSLFGSFSVLPSTGKTKGILRAHSNSTGSSNASPKLSSNASTASDMSPLKNTSSLCLDEKLFIQSLYKVLVSVSEKSSIILYIRDAEKIFLQSERLYNLFHKMLEKLSGPVMVIGSQILDSGVDESPATLFPYNIGVKPPEDDCNALQEDNMKIIQFQDNKKHIAEVLAANDIECNDLNSICHADTRVLSKYIEEIVVSAIHYYLMNTTDPEYRNGKLVISSESLSHGLNLFQEGNSSSEDTLKLETSGKKEVPPDNEFEKHIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINISMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMMHWDGLLTKPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLAKEKTENLDFKDLAIMTEGYSGSDIKHLCTTAAYRPVRELMKQERLKDMEKNKKAAAEQCSEDASDTKGDGEERVITLRPLNMEDMRQAKSQGTIRILHSHAISRGGRFVCHGQQCQTSYFHLFFYPLFYLESIPFSLNLLPKFILQSFLGSNGYCFT 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1120 784 SMART AAA_5 477 614 IPR003593 GO:0016887
Prci1g1120 784 Pfam AAA+ lid domain 633 677 IPR041569 -
Prci1g1120 784 Pfam ATPase family associated with various cellular activities (AAA) 481 611 IPR003959 GO:0005524|GO:0016887
Prci1g1120 784 MobiDBLite consensus disorder prediction 397 422 - -
Prci1g1120 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 667 IPR027417 -
Prci1g1120 784 ProSitePatterns AAA-protein family signature. 584 603 IPR003960 GO:0005524|GO:0016887
Prci1g1120 784 Gene3D - 440 612 IPR027417 -
Prci1g1120 784 Gene3D - 613 683 - -
Prci1g1120 784 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 440 615 - -
Prci1g1120 784 MobiDBLite consensus disorder prediction 186 213 - -
Prci1g1120 784 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1120 Prci-Chr1 17843597 17853772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1120 441 685 Calmodulin-binding Proteins AT3G56690 38.554 2.20e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1120 - - pcin:129318041 1503.42