LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g1117	ATGGCCGGGAACCTCGTTCTCTCTGATGGAAATGTCACTCTCTGGGCCTCAAACACCTCTGGCACTGGCGTACATTCAGCATCCATGGAGGAATCCGGCAACTTTGTCCTCTATATGTCCTCCTCCGCCGTCAGCCGCCCTGTCTGGCAGAGCTTCTCACAGCCATCCGACACTCTCCTACCAAACCAACCCATAACTGTCTCGTCGGAACTAACATCCTCAAAATCTGCTTCTCATGGTGGCTTCTACGCCCTCAAAATGCTTCAACAAACCACTTCTTTAAGCCTTGGCCTCACTTACATGCTCCCAGATTCAGAATCTTACACCAATTATTCCTACTGGCAAGGCCCAGATATCTCCAATGTCACAGGGAATGTCACAGCAATTTTAGATCAAGCGGGAAGCTTCGGGATTGTCTATGGAGATTCTTCAAATGGGGCCGTTTATATTTATAAAAATGGAAACGATGACTTGGGGTTATTTTATTCCTCTCACCAAACAACCCCATTCAGCATTTTTAGAAGACTGACACTAGAGAAGAATGGAAATCTGCATTTGTATCGTTGGGACGATGATGTGAATGGGTCAAGACAGTGGGTATCAGAGTGGGCTGCCGTATCAAACCCTTGTGATATTGCTGGAATTTGTGGTAATGGGATTTGTAAATTAGATAGAAGTAAGACTAGTGCATCTTGTACTTGCTTGCCTGGGACTTCTCAAGTTGGAAGGGATGGCCTTTGCTATGAGAATTCTTCACTAGTTGGAAAATGCAATCCCCAACATGAAAACAAGAACCAAACCCAAACATCAGAGTTTGAGATTTCTGTAGTGCAACAGACAAATTATTATTTTTCTGAAATGTCTGTGGTAGCTAACTACAGTGATGTTGCTACTTTGTCAAAATGTGGGGATGCCTGCTTATCAGATTGTGATTGTGTTGCTTCAGTTTATGGTTTAACTGAAGAAACACCATATTGTTGGGTATTAAAGAACTTGGATTTTGGAGGGTTTGAGGACACTAGTGCAACCTTATTTGTGAAGGTCAGGTCAAATGGCTCAGTGAACCCAGAAGGTAAAGCTAGAGGATCTACCAATAATTCTGATGGTGAAGTTAAAGAGAAGGTTTTGGTCCTTCCAATTGTTCTTAGTATGACACTTCTTATTGCCCTTTTATGTTTACTGCTATACTATAATGTTCACCGAAAAAGAACATTAAAAAGGGAGATGGAAAGTTCTTTGATCTTATCAGGTGCTCCTATGAACTTCTCCTATCGTGATTTGCAAATCAGGACTTCTAACTTCACGCAGTTGCTAGGAACAGGTGGATTCGGAAGTGTGTACAAAGGAAGTCTTGGAGATGGGACACTAGTGGCAGTAAAGAAACTTGATAGGGTTTTGCCTCATGGAGAAAAGGAATTCATCACTGAAGTAAACACCATTGGCTCGATGCACCACATGAACTTGGTTCGATTATATGGCTATTGCTCAGAGGGATCACATCGGCTACTAGTGTATGAGTTCATGAAAAATGGGTCTTTGGACAAATGGATCTTTCTTTCGTATCAAGGAAAAGATAGGTTGCTAGATTGGCAAACTCGGTTTGATATAGCTATTGCTACTGCACAAGGGATTGCATACTTTCATGAGCAGTGCAGGAACCGAATTATACATTGTGATATAAAGCCAGAAAATATTCTGTTGGATGAGAATTTTTGTCCTAAAGTATCTGATTTTGGATTGGCAAAACTGATGGGAAGGGAGCATTCTCATGTGGTAACAATGGTGAGAGGGACTAGAGGTTATTTAGCACCAGAATGGGTTAGCAATCGCCCAATAACAGTAAAAGCTGATGTTTATAGTTATGGAATGCTTCTGCTAGAGATTATTGGTGGCCGAAGAAATCTTGACATGTCCTTTGATGCAGAGGACTTCTTTTATCCTGGTTGGGCTTATAAGGCACTGACAAATGGGACATCAATAAAAGTAGCAGATAGGAGATTGAATGGGGCAGTTGATGAAGAGGAGCTGACAAGAGCTCTGAGAGTTGCATTTTGGTGCATCCAAGATGAGGTTTTCACGAGACCAACAATGGGAGAAGTGGTGAGGATGCTGGAAGGGTCCATTAGCATCAACACACCACCAATGCCACAAACAATAACAGAATTGATTGAAGAAGGCTTAGAGCAAGTGTATAGAGCTATGAAGAGAGAGTATAATAATCATTACAGCTCATTCACCTTGACTAGCCATCCTTCTTCTCATGCTACTTGTAGCAATTCCACAATGTCACCAAGATAG	2298	0.4195	MAGNLVLSDGNVTLWASNTSGTGVHSASMEESGNFVLYMSSSAVSRPVWQSFSQPSDTLLPNQPITVSSELTSSKSASHGGFYALKMLQQTTSLSLGLTYMLPDSESYTNYSYWQGPDISNVTGNVTAILDQAGSFGIVYGDSSNGAVYIYKNGNDDLGLFYSSHQTTPFSIFRRLTLEKNGNLHLYRWDDDVNGSRQWVSEWAAVSNPCDIAGICGNGICKLDRSKTSASCTCLPGTSQVGRDGLCYENSSLVGKCNPQHENKNQTQTSEFEISVVQQTNYYFSEMSVVANYSDVATLSKCGDACLSDCDCVASVYGLTEETPYCWVLKNLDFGGFEDTSATLFVKVRSNGSVNPEGKARGSTNNSDGEVKEKVLVLPIVLSMTLLIALLCLLLYYNVHRKRTLKREMESSLILSGAPMNFSYRDLQIRTSNFTQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLYGYCSEGSHRLLVYEFMKNGSLDKWIFLSYQGKDRLLDWQTRFDIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFDAEDFFYPGWAYKALTNGTSIKVADRRLNGAVDEEELTRALRVAFWCIQDEVFTRPTMGEVVRMLEGSISINTPPMPQTITELIEEGLEQVYRAMKREYNNHYSSFTLTSHPSSHATCSNSTMSPR	765

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g1117	765	CDD	STKc_IRAK	438	706	-	-
	Prci1g1117	765	SUPERFAMILY	alpha-D-mannose-specific plant lectins	3	68	IPR036426	-
	Prci1g1117	765	ProSitePatterns	Protein kinases ATP-binding region signature.	438	461	IPR017441	GO:0005524
	Prci1g1117	765	Pfam	D-mannose binding lectin	2	70	IPR001480	-
	Prci1g1117	765	ProSiteProfiles	Protein kinase domain profile.	432	708	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g1117	765	Pfam	Protein kinase domain	435	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g1117	765	Pfam	S-locus glycoprotein domain	160	237	IPR000858	GO:0048544
	Prci1g1117	765	Gene3D	Transferase(Phosphotransferase) domain 1	508	722	-	-
	Prci1g1117	765	Gene3D	Phosphorylase Kinase; domain 1	396	507	-	-
	Prci1g1117	765	SUPERFAMILY	Protein kinase-like (PK-like)	410	705	IPR011009	-
	Prci1g1117	765	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	508	714	-	-
	Prci1g1117	765	Gene3D	-	2	96	IPR036426	-
	Prci1g1117	765	FunFam	S-receptor-like serine/threonine-protein kinase	401	507	-	-
	Prci1g1117	765	ProSiteProfiles	Bulb-type lectin domain profile.	1	50	IPR001480	-
	Prci1g1117	765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	555	567	IPR008271	GO:0004672\|GO:0006468
	Prci1g1117	765	SMART	serkin_6	432	704	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g1117	765	PIRSF	SRK	1	759	IPR024171	GO:0004674
	Prci1g1117	765	PANTHER	OS07G0415500 PROTEIN	3	716	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g1117	Prci-Chr1	17799816	17806990	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g1117	382	714	Receptor kinase-like Gene Family	AT5G20050	42.778	6.58e-84	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Prci1g1117		Pkinase	3.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g1117	-		-	aip:107616087	1247.26