Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1085 ATGGCAGATCTTGCTAACTACGGGAATGCCGACCGTGATATTGAACAGCAGGCATTGATAGCTTTGAAAAAAGGGGCTCAACTGCTTAAATATGGTCGCAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCCATGATGAATCTTCTTTAGTTTGGATATCAAGCAGTGGAGAAAGACATCTGAAGCTATCTTCTGTCTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTATTTGCGTCCTGAGAAGGATTATTTATCTTTTTCACTTATTTACAACAACGGAAAGCGGTCCCTTGACTTGATTTGCAAGGATAAAGCTGAGGCTGAAGTTTGGATTGCTGGCCTCAAATCACTGCTCTCCTCTGGTCATGGTGGCCGGTCCAAAATTGATGGATGGGGTGATGGGGGCCTCTATCTTGATGATAACAGAGAATTGAATTCAAATCGGCCAAGTGGAAGTTCAGTTGGTACTTCCCAAGATATTAGCTCTCCTGAAGTTTCTTTGAGTCTTAATTTAAATTCTCCTTCGAAGTCCTTCAGTCCTGAGAATATTGCTAATTCTGAAAGGTCACATGCACCATCTGATTCAACGAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTTTCAAGTGCCCCAAGTACATCTAGTCATGGATCAGCACCAGATGACTGTGATGCTCTTGGGGATGTTTACCTATGGGGAGAGGTCATCAGTGAGAACATTGTAAAAGTTGGTGCTGATAGAACTGCTAACTATTTTAGCTCAAGGGCAGATGTGCTTTTACCAAGACCATTGGAGTCCAATGTAGTTTTAGATGTACACCATATAGCATGTGGTATTAAGCATGCTGCTCTAGTCACAAGGCAAGGCGAAATTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGAGAAGAATGCGCTTCAACCCCATTTAGTTGAAGCATTGGCTTCTACAACTGTTGACTTTGTTGCCTGTGGTGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAATTATATACTTGGGGTGATGGTACTCACAATGCTGGTCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCAAAGAGGATTTCTGGTCCGCTGGAGGGACTTCAGGTTTCTTTAGTCTCTTGTGGTCCATGGCACACAGCCTTGGTAACTTCAAGTGGGCAGCTTTTTACATTTGGTGATGGAACTTTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCTTATCCTAAAGAAGTAGAATCCTTATCTGGGCTGAGGACAATAGCTATTGCATGTGGTGTGTGGCATACTGCAGCTGTGGTGGAGGTTATAGTAACACAATCCAGTGCTAGTGTATCATCAGGTAAATTGTTTACCTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAAGCCCGGCTGAAACCAACTTGTGTGCCTTTGCTTATTGACTACAATTTTTATAAAATTGCTTGTGGACACAGTTTGACTGTTGGCTTGACAACGTCAGGACACGTTTTTACAATGGGTAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAAGTGCCTTGCTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAGTTGCATGTGGTGCTTATCATGTTGCAGTTTTAACATCTAAAAACGAAGTTTATACATGGGGAAAGGGTGCGAATGGGAGGTTGGGTCATGGAGATGTTGAAGACAGGAAAATACCAACTTTGGTTGAAGCTTTGAAGGATAGGCATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATTTGCCTTCATAAATGGGTATCAGGTGCAGAACAGTCTCAGTGCTCTGCTTGTAGGCAGGCATTTGGATTCACTCGAAAGAGGCATAATTGTTATAATTGTGGACTTGTACACTGCCATTCATGCAGTTCAAGGAAAGCTCCTAGAGCAGCTCTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATGCAAAACTAAGCAAGGTTTCAGAAGCTGGCAGTAATAATAGGAAGAATGTTATGCCACGTTTGTCTGGTGAAAACAAGGACAGGTTGGATAAGTCTGAGATAAGAGCATCCAAAGTGGTTCCCTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAAGCAGCCAAGCAGGGGAAGAAGGCTGATACATTTGCCCTAGTTCGCACCTTACAAGCACCTTCAATGCTGCAACTGAAGGATGTGGTCTTGTCCACTGCTATTGATCTGAGACAAACAGCTCCAAGACCAGTTCTTGCACCATCTGGAGTAAGCTCCAGATCTGTGTCCCCTTTCTCTAGGCGGCCTAGCCCCCCTCGTTCTGCTACACCTATTCCAACCACATCTGGACTTTCTATCTCCAAAAATATTGCTGACAGTTTAAAGAAAACAAATGAACTTTTAAATCAAGAAGTGATGAAGCTACGTTCACAGGTTGAGAGCCTGAGGCAAAGATGTGAACGGCAAGAATTGGAGCTTCAAAGGTCAGCTAAGAAAACTCAGGAAGCTATGGCACTTGCTGCTGAGGAGTCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCGCTTACAGCACAGCTCAAAGACCTAGCTGAGAGACTCCCTCCTGGAGCTAATGATGCTGAGAGCATAAGACCAGCCTACCTACCAAATGGTTTGGATTTAAATGGCATCCACTATCCAGACTCAAACAGGGAGCGCCACTCTCGAGCTGAGTCAATCAGTGCCTCGAGCTTGGCCTCTGTAGGACTTGAATCGTCTGTGTCAAATAGACCTGAGGGAAATTTATCTGTAGCGTATGGAACTAATCTTTACCAGCAAAACCGGCAGCTCATGACCTCCAACGGGACTAATGAACCCTCAGATGTTAAATTGCCAAATGGTGGAATGACTCCCACAAGCAACCATTTGTCGGACACCGTTGATAGTAGGGATTCAGGACATTTACAAGATGGTGAGAGTTGTTTGAGATCAAAGGATGGTGTACTGGCTACTAACAGTAGTCAAATTGAGGCAGAGTGGATTGAACAGTATGAACCTGGTGTGTATATAACACTCATGGCCCTTAAGGATGGAACACGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGCGAGCATCAAGCGGAGACATGGTGGTCAGAGAACCGTGATAAGGTATATGAAAGGTACAATGTTCACAGCACCGACAAATCTTCGGGCCAAGCAGCTCGAAAAGCAGAAGGAGCTGCTTCACCCGTTGCCCTATCGTAG 3363 0.4422 MADLANYGNADRDIEQQALIALKKGAQLLKYGRKGKPKFCPFRLSHDESSLVWISSSGERHLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKAEAEVWIAGLKSLLSSGHGGRSKIDGWGDGGLYLDDNRELNSNRPSGSSVGTSQDISSPEVSLSLNLNSPSKSFSPENIANSERSHAPSDSTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYLWGEVISENIVKVGADRTANYFSSRADVLLPRPLESNVVLDVHHIACGIKHAALVTRQGEIFTWGEESGGRLGHGVEKNALQPHLVEALASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDISHWIPKRISGPLEGLQVSLVSCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRENVSYPKEVESLSGLRTIAIACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPLLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEVACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKAPRAALAPNPGKPYRVCDSCYAKLSKVSEAGSNNRKNVMPRLSGENKDRLDKSEIRASKVVPSNMDLIKQLDSKAAKQGKKADTFALVRTLQAPSMLQLKDVVLSTAIDLRQTAPRPVLAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSISKNIADSLKKTNELLNQEVMKLRSQVESLRQRCERQELELQRSAKKTQEAMALAAEESAKCKAAKEVIKSLTAQLKDLAERLPPGANDAESIRPAYLPNGLDLNGIHYPDSNRERHSRAESISASSLASVGLESSVSNRPEGNLSVAYGTNLYQQNRQLMTSNGTNEPSDVKLPNGGMTPTSNHLSDTVDSRDSGHLQDGESCLRSKDGVLATNSSQIEAEWIEQYEPGVYITLMALKDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVHSTDKSSGQAARKAEGAASPVALS 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1085 1120 Gene3D - 174 458 IPR009091 -
Prci1g1085 1120 SUPERFAMILY PH domain-like 16 124 - -
Prci1g1085 1120 Pfam Transcription factor BRX N-terminal domain 876 910 IPR027988 -
Prci1g1085 1120 SUPERFAMILY FYVE/PHD zinc finger 626 698 IPR011011 -
Prci1g1085 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 522 573 IPR000408 -
Prci1g1085 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 575 622 IPR000408 -
Prci1g1085 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 469 516 IPR000408 -
Prci1g1085 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 521 570 IPR000408 -
Prci1g1085 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 406 455 IPR000408 -
Prci1g1085 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 300 348 IPR000408 -
Prci1g1085 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 352 402 IPR000408 -
Prci1g1085 1120 Gene3D - 459 631 IPR009091 -
Prci1g1085 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 59 901 - -
Prci1g1085 1120 SMART fyve_4 624 693 IPR000306 GO:0046872
Prci1g1085 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 286 296 IPR000408 -
Prci1g1085 1120 Coils Coil 874 901 - -
Prci1g1085 1120 Gene3D - 14 129 IPR011993 -
Prci1g1085 1120 FunFam Putative E3 ubiquitin-protein ligase HERC1 632 700 - -
Prci1g1085 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 352 406 IPR000408 -
Prci1g1085 1120 Pfam FYVE zinc finger 626 692 IPR000306 GO:0046872
Prci1g1085 1120 ProSiteProfiles BRX domain profile. 1040 1095 IPR013591 -
Prci1g1085 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 630 692 IPR017455 -
Prci1g1085 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 470 521 IPR000408 -
Prci1g1085 1120 CDD PH_PLC_plant-like 12 125 - -
Prci1g1085 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1039 1094 IPR013591 -
Prci1g1085 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 445 455 IPR000408 -
Prci1g1085 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 703 IPR013083 -
Prci1g1085 1120 MobiDBLite consensus disorder prediction 784 818 - -
Prci1g1085 1120 MobiDBLite consensus disorder prediction 148 231 - -
Prci1g1085 1120 SUPERFAMILY RCC1/BLIP-II 238 627 IPR009091 -
Prci1g1085 1120 MobiDBLite consensus disorder prediction 149 230 - -
Prci1g1085 1120 MobiDBLite consensus disorder prediction 996 1022 - -
Prci1g1085 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 407 458 IPR000408 -
Prci1g1085 1120 FunFam PH, RCC1 and FYVE domains-containing protein 1 209 459 - -
Prci1g1085 1120 Coils Coil 825 866 - -
Prci1g1085 1120 FunFam PH, RCC1 and FYVE domains-containing protein 1 460 631 - -
Prci1g1085 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 300 351 IPR000408 -
Prci1g1085 1120 Pfam Pleckstrin homology domain 14 124 IPR001849 -
Prci1g1085 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 574 625 IPR000408 -
Prci1g1085 1120 PRINTS Chromosome condensation regulator RCC1 signature 352 368 IPR000408 -
Prci1g1085 1120 PRINTS Chromosome condensation regulator RCC1 signature 393 409 IPR000408 -
Prci1g1085 1120 PRINTS Chromosome condensation regulator RCC1 signature 569 590 IPR000408 -
Prci1g1085 1120 PRINTS Chromosome condensation regulator RCC1 signature 511 529 IPR000408 -
Prci1g1085 1120 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Prci1g1085 1120 PRINTS Chromosome condensation regulator RCC1 signature 409 423 IPR000408 -
Prci1g1085 1120 MobiDBLite consensus disorder prediction 1097 1120 - -
Prci1g1085 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 393 403 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1085 Prci-Chr1 16940108 16948795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1085 1041 1111 Major Intrinsic Protein MIP AT1G31880 46.479 9.50e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1085 - - gmx:100783270 1816.2