Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1082 ATGGCGAGGGAGAAGCTATACGTCGCCGTTCCAAGCCTCTTCCGGTGCCCCATCTCAATGGACGTAATGAGGTCTCCGGTAAGCCTCTGCACCGGCGTCACATACGACCGCTCCAGCATCCAGCACTGGCTCGACGCTGGCCACGACACCTGTCCAGCGACCATGCAAGTCCTCTCGTCCAAAGATTTCATCCCCAACCTCACTCTCCACCGCCTCATCCAGAATCTGAAGCTATCTCCCTCGCTTTCTTCTCCTTCCAAAATCTCCCCCGAACAGGTTACGTCTCTCATTCATGAAATTCAACAACATGAGAATGACGATATTTCTGTTTCGCTTTCCAAGATCGCGGAATTCGTCGGGTACTCGGACGAGAATCGGATTTTCTTGTCTAATTTCCATGGGTTCGACTCGACGATCGTTCGTGTTCTCGGCAGGCAGGGTTCTCAGGTTGAGATTTCAGAAATGGCGATCAGGGTTTTGATTTCGATCATGCGGGAAAATGGAGTCAGAGAACGAATTCGTGCCTTGGTTTTCGATGCTAATCGAGATTTCCTATCTTCGATCATCTCGATTTTGTCAAACGGAAGCTCTAAGACCTCGAAGGTTGAATCGGTAACGGTCCTCGAATTGCTTGCCGGAGATGTTCAATCGAAGCGATCAGTCGCCGAGACGCCGGGCCTTTTGTCCGTACTTGTCCACCTACTACGCGAAGAAAACAATACCAGCTCCAAACTAAACGACGCCGTTTCCTCTCTCTTGATATCCGTTTCAGCGACTCAGTCAACAAAAACTGAACTCGTCCGGTTCGGAATCGTTCCGATTCTGACCAAAAGTTTACAGAACCCATCATCATCATCAACCTCAAGCAATTCAACCACTGAGAAATCCATGAGATTGCTGGCGATACTATCGACTTGTGCAGACGGAAGGCATGTGATCACGGAGGAGCCGGGATGCTTGGAGGCGGTGACGGAGAGGCTGGTGAGGGAGTCGAAGGCGGCGACGGAGGACGCAGTGGTGGTGCTGTGGGGCTTGTGCTGTAATCACCGGAACGGCAATGCACAAGGAAAGGTTGTGAAGAGCAATGGAGTGACGAAGATACTGCTTGTGCTTCAAAGAGAATGCGAAGATCATGTGAGGAAGATGTGTAGGGATTTGGTGAAGGTTCTGAGAATGGTGTCCAAAGATGAGTTGTTGAGTAGCTACGAGACGAAAACCACTCATATCAAGCCTTGTTAG 1239 0.5028 MAREKLYVAVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQHWLDAGHDTCPATMQVLSSKDFIPNLTLHRLIQNLKLSPSLSSPSKISPEQVTSLIHEIQQHENDDISVSLSKIAEFVGYSDENRIFLSNFHGFDSTIVRVLGRQGSQVEISEMAIRVLISIMRENGVRERIRALVFDANRDFLSSIISILSNGSSKTSKVESVTVLELLAGDVQSKRSVAETPGLLSVLVHLLREENNTSSKLNDAVSSLLISVSATQSTKTELVRFGIVPILTKSLQNPSSSSTSSNSTTEKSMRLLAILSTCADGRHVITEEPGCLEAVTERLVRESKAATEDAVVVLWGLCCNHRNGNAQGKVVKSNGVTKILLVLQRECEDHVRKMCRDLVKVLRMVSKDELLSSYETKTTHIKPC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1082 412 Gene3D - 69 403 IPR011989 -
Prci1g1082 412 PANTHER WDSAM1 PROTEIN 10 396 IPR045185 GO:0061630
Prci1g1082 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Prci1g1082 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Prci1g1082 412 FunFam RING-type E3 ubiquitin transferase 10 82 - -
Prci1g1082 412 SUPERFAMILY ARM repeat 182 390 IPR016024 -
Prci1g1082 412 CDD RING-Ubox_PUB 11 63 IPR045210 -
Prci1g1082 412 SUPERFAMILY RING/U-box 6 78 - -
Prci1g1082 412 Pfam U-box domain 10 75 IPR003613 GO:0004842|GO:0016567
Prci1g1082 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1082 Prci-Chr1 16829899 16831137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1082 7 411 U-box Gene Family AT3G18710 40.610 4.17e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1082 - - qsa:O6P43_008115 444.121