Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1049 ATGATGCAGCTAGGGAACCCGACCACAGTCGTATCTGGGATGGTTTCTAAGGCTGCCGAAGCAACGCTTTCGCCACCGCCACGGCCACCGGAAGACGTCGAGGCACCGGGCGGTGGTGATGAGATCATAATTGGAATGGATAATACTGCAGCAGCAGCAACTTCATCTGGTGAAGGTGACAAGATGAACAGTGGAGGGAACCGGTGGCCCCGCCAAGAGACTTTGGCTCTGTTGAAGATAAGGTCTGATATGGATTCTGTGTTTCGAGATTCAAGTCTTAAAGGTCCACTCTGGGAAGAGGTTTCAAGGAAGCTAGGAGAGCTTGGATATCAGAGAAGCGCAAAGAAGTGCAAAGAGAAATTTGAAAACGTGTTCAAGTACCACAAGAGAACCAAAGATAACAGAAGTGCCAAACCAGAAGGAAAGACCAAAACCTATAGGTTTTTCGATCAACTAGAAGCTTTTGAATCTCGATTATCTCTTTCTCACTCTCTGCCTCAATCTCATCAATCTCATTCTCAACCTCAAACTCAATCTCAGTCTCATCATAATCCTCCAAAATCATTATCCCAACCTTTTAAAAATTTTCCTTCAAATACACTGGCGTCATTGCCATTTCTCTCAAGGCCTAGTGATCATTCATCAACAACTGTTCCATCCTTAAATCCTCCGATAGCGCCGCCGAAGAACACGAACCTTTCGACGTCGACCTCGTCATCCACGGCCTCTGACGAGGACTTGGAAGAGAGGTACAGGAAGAAGAGGAAGTGGAAGGACTGCTTCAGGAGGCTTACAAGGCGGGTCTTGGTCAGACAGGAAGAGATGCAGAAGAGGTTCTTGGACGCCATTGACAAGCGAGAGCGAGAACGTGTAGCTCAGCAAGAGGCTTGGAGGATGCAAGAGATGTCTCGGATCAATCGAGAACACGAAATCCTCGTTCAAGAACGATCCACAGCTGCCGCAAAGGACGCTGCTGTCATTGCATTCTTACAGAAGTTATCCGGCGGGCCACAGCACACTCAGCCTCCACCACCACCTCCACCGCAGCCGCTGGTGGTGTCGGTGACGCAATTCCAACCACAGCCACAGTTGGCAGTGATGCCGAATACCAACATTAGCTACGAAAAGTTTGAAATCCAGAAAATGAATAATAACAACAATCACAAAATCAACGGCGGCGGAGGTGGAGGTGGCGGTGGTTCTTCACGGTGGCCGAAGACGGAGGTACATGCATTGATAAGGCTGAGGACGAATCTGGAGGCAAAGTATCAGGAAAACGGCCCTAAGGCTCCATTGTGGGAGGAGATATCGAGTGGAATGCAGAAGTTAGGATACAATAGAAGTTCCAAGAGATGCAAGGAGAAGTGGGAGAACATAAACAAATACTTCAAAAAGATCAAAGAAAGCAACAAGCAAGACGTGAAGATAGTAAGACTTGTCCTTACTTCAATGAACTCGAAGCTTTGTACAAAGAAAAGACCAAGACCCAGAACAACAACGACATTGACAGCCTCTTCAGTAACTCATTTGATCACAATGTGGAGCCATTGA 1551 0.4739 MMQLGNPTTVVSGMVSKAAEATLSPPPRPPEDVEAPGGGDEIIIGMDNTAAAATSSGEGDKMNSGGNRWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLGELGYQRSAKKCKEKFENVFKYHKRTKDNRSAKPEGKTKTYRFFDQLEAFESRLSLSHSLPQSHQSHSQPQTQSQSHHNPPKSLSQPFKNFPSNTLASLPFLSRPSDHSSTTVPSLNPPIAPPKNTNLSTSTSSSTASDEDLEERYRKKRKWKDCFRRLTRRVLVRQEEMQKRFLDAIDKRERERVAQQEAWRMQEMSRINREHEILVQERSTAAAKDAAVIAFLQKLSGGPQHTQPPPPPPPQPLVVSVTQFQPQPQLAVMPNTNISYEKFEIQKMNNNNNHKINGGGGGGGGGSSRWPKTEVHALIRLRTNLEAKYQENGPKAPLWEEISSGMQKLGYNRSSKRCKEKWENINKYFKKIKESNKQDVKIVRLVLTSMNSKLCTKKRPRPRTTTTLTASSVTHLITMWSH 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1049 516 CDD GT1 402 467 - -
Prci1g1049 516 MobiDBLite consensus disorder prediction 227 242 - -
Prci1g1049 516 MobiDBLite consensus disorder prediction 160 220 - -
Prci1g1049 516 MobiDBLite consensus disorder prediction 15 42 - -
Prci1g1049 516 ProSiteProfiles Myb-like domain profile. 402 460 IPR001005 -
Prci1g1049 516 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Prci1g1049 516 Gene3D - 404 465 - -
Prci1g1049 516 Gene3D - 69 130 - -
Prci1g1049 516 PANTHER FI21293P1 34 472 - -
Prci1g1049 516 MobiDBLite consensus disorder prediction 160 251 - -
Prci1g1049 516 FunFam Trihelix transcription factor GT-2 69 130 - -
Prci1g1049 516 Pfam Myb/SANT-like DNA-binding domain 402 473 IPR044822 -
Prci1g1049 516 Pfam Myb/SANT-like DNA-binding domain 67 154 IPR044822 -
Prci1g1049 516 CDD GT1 67 132 - -
Prci1g1049 516 SMART sant 65 127 IPR001005 -
Prci1g1049 516 SMART sant 400 462 IPR001005 -
Prci1g1049 516 FunFam Trihelix transcription factor GT-2 404 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1049 Prci-Chr1 15094474 15096890 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1049 394 509 Trihelix Transcription Factor Family AT1G76890 38.983 1.48e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Prci1g1049 Myb_DNA-bind_4 3.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1049 - - pcin:129303652 904.049