Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1044 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCGGGCCATCATAGGAGGTCACAAAGCTCAGTACACGAGTTGCAGGTTGAAGCTCCAGTTATACAGAACAGCCGGTGGGCTAGCCTTCCACCAGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAGCAAGTGAGAGTACATGGCCTGGTCGTAAAAACGTAGTTACTTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCAGAGTTCTCTGGGAAGATTACTTTCCCTATTTCCCTAAAACAGCCCGGATTCAGGGATGGAACCATCCAGTGTCTCATCAAGAGGGACAAATCTAATTTGACATACCAACTTTCTCTCTGCCTTAGTCCTGCATTGCTCGTTGACAATGGGAAGTTTCTTTTATCAGCGAAAAGAACTAGGAGAACTACGTGCACAGAGTATATTATATCAATGGATGCACATGACATGTCAAGATCTAGTAGTAGGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACTCAGCCTCCCTACAATAATTCTCAGCTGTCTCCCCCTGGCCGAAGCCGTAGGTTTTATTCAAAGAAGGTTTCTCCGAAAGTCCCAAGTGGCAGCTACAATATTGCCCAAATCACTTATGAGCTTAATGTGCTAGGTACTAGGGGACCTCGACGGATGCACTGTACCATGTATACTATCCCCACATCATCTCTCCAGCCTGGTGGCATTGTCCCGGGCCAGCCTGAGCTTCTTCCCCGCTCCCTCGAGGATTCATTCAGAAGTATATCCTTCTCAAAATCGATTGACAATTCAACTGAGTTTAACAGCTCGAGGTTCTCAGACATAATGGGTCCCGGAAACGAAGAGGAGGAAGTTAAGGAGAGACCGTTAGTTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCCTAAACTTCCGGGGGAGGGTGACCGTTGCATCTGTCAAAAATTTTCAGCTGATTGCGGCAACTACACCACCCGCAGCCGGTGCCCCAACACCAGCACAGCCAGCGCAGCCATTGCAGTCTGATCATGACAAGATTATTCTTCAGTTCGGCAAGGTTGGGAAGGACATGTTCACAATGGATTACCGATATCCCCTATCAGCGTTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCTTGTGAATAG 1284 0.4704 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRRSQSSVHELQVEAPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKNVVTCAAVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCLIKRDKSNLTYQLSLCLSPALLVDNGKFLLSAKRTRRTTCTEYIISMDAHDMSRSSSRYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMHCTMYTIPTSSLQPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFNSSRFSDIMGPGNEEEEVKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATTPPAAGAPTPAQPAQPLQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1044 427 SUPERFAMILY F-box domain 41 95 IPR036047 GO:0005515
Prci1g1044 427 FunFam Tubby-like F-box protein 109 427 - -
Prci1g1044 427 SUPERFAMILY Tubby C-terminal domain-like 101 427 IPR025659 -
Prci1g1044 427 Gene3D - 47 100 - -
Prci1g1044 427 Pfam F-box domain 52 99 IPR001810 GO:0005515
Prci1g1044 427 FunFam Tubby-like F-box protein 47 100 - -
Prci1g1044 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Prci1g1044 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Prci1g1044 427 CDD F-box_AtTLP-like 52 96 - -
Prci1g1044 427 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Prci1g1044 427 Pfam Tub family 113 422 IPR000007 -
Prci1g1044 427 PANTHER TUBBY-RELATED 39 425 - -
Prci1g1044 427 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Prci1g1044 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Prci1g1044 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Prci1g1044 427 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Prci1g1044 427 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Prci1g1044 427 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Prci1g1044 427 PRINTS Tubby superfamily signature 233 260 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1044 Prci-Chr1 14614407 14618664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1044 1 427 TUB Transcription Factor Family AT1G76900 67.826 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci1g1044 Tub 8.3e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1044 K19600 - fve:101295095 731.865