Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1033 ATGGCGGATCCACCTTTTAAGCGGAAACGTATGCCGGTGGGATACAGATTCCATCCGACGGAAGAAGAGCTCGTCGCTTACTACCTTCACCACAGATTGAAGGCTGATAATCCATCCATTAACGTCGCCATCCCTGAGATTGACGTTTGCAAGTTCGAACCCTGGGATTTGTTAGCTTGGGCTGCTAAATTGACTTCGGTGATCAAGTTCGATGACTCAGAATGCTATTTCTTCACCCCTTGTGATTATAAGTACTCTAAAAGTACTCGGTTGAACAGGACAACGTCGCTCGGCTTCTGGAAAGTCACCGGCAAAGACAGGAATATTTGTGATCGAGACACCAACAACGTCATTGGGATAAAAAGGATTTTAATTTTTCACGAAGAACGTTTTTCATTGTAA 402 0.4428 MADPPFKRKRMPVGYRFHPTEEELVAYYLHHRLKADNPSINVAIPEIDVCKFEPWDLLAWAAKLTSVIKFDDSECYFFTPCDYKYSKSTRLNRTTSLGFWKVTGKDRNICDRDTNNVIGIKRILIFHEERFSL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1033 133 ProSiteProfiles NAC domain profile. 11 133 IPR003441 GO:0003677|GO:0006355
Prci1g1033 133 SUPERFAMILY NAC domain 7 130 IPR036093 GO:0003677|GO:0006355
Prci1g1033 133 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 130 - -
Prci1g1033 133 Gene3D NAC domain 20 132 IPR036093 GO:0003677|GO:0006355
Prci1g1033 133 Pfam No apical meristem (NAM) protein 12 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1033 Prci-Chr1 14223868 14226284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1033 11 130 NAC Transcription Factor Family AT3G49530 50.000 5.68e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g1033 NAM 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1033 - - pcin:129322879 285.034