LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g0997	ATGTTATTTCAAACGGTGGCGCACCAACAGGGGTCAGGCGGGTTCGCGAGGTTGACGGCCCATGACGGCGCCGCAGATGGGGAAGAAGAAGCACTGAACAAAGCTGCGGCGGCGGCGGCGGCGGAGGCTGCTGAGGTGGAGGAGGAGGAGGAGGAGGCTGTGTTTGCTGGATATAGCAGTAGCAGGGCGGGCGAGTTGACGGCGATGGTTTCGGCGCTGACGCACGTGGTGTCAGGATCTGGTGGCCAGAGGTGCACCGAATGGATCCCTGTGGCCGTGACGTCAGCTCCTGGCCAGCCTTCTCCTTCTTCTGCTGTTTTATCGCCTTACTCATCATCTTCTTCCTCATCATCTTCTTCATCTTCTTCTGCTTCAGGCTCTGTTTTGAGCTCTGCCTCTGGTTCCACCGCCTCCCTTGTTGGCCACAAACGAGCACGTGACCAACACAGCTCTGTCTATGGAGCTTTCACTGACTTCAGAGTTCCTTCTCAGGGACAATCATCATCAGTGGTGGAAGAGGGTTCGAATGTGGCAGCCGGAGCAGTGGTGGAGACGATGGCGACGGCGGAGGGGAGTGGGGAGAGGAGGAGGAGGTACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCGGAAATTCGCGATCCTCACAAGGCGGCGAGAGTCTGGCTGGGGACGTTCGACACGGCGGAGGCAGCGGCAAGAGCTTACGACGAAGCTGCATTGAGATTCCGAGGTAACAAAGCCAAACTGAATTTCCCAGAAAACGTGAGGGTGGTGCCCCCTGCTCAAAACTTTCCGGCCACTCGCCTCGCCGTGTCGGATTCACCGGCGACTCTTTTCCAGCAACAGACACCTAATCTTCCTCCTCCTCCTCGCCCTCATCCTCCCCTGCAACCACCGTTCTTTCAGTCACCGTCTTTTCAGACGCCGTCGGATTCCATCAGAGACTATTGGGAATACTCTCAGCTTCTTCAGAGCTCTGATGACTTCCTGCAACATCAACAACAACAGCAACAACATTCGAATTTGCTGCAACAATGGATCTACAATTCACAATTGATGGCGCTTCAATCATCTTCCATGTTATTATCGTCGTCGTCGTCACCCCTGTCGTCATCTTCCTCGCCAACAGCATTTTCACCTTCAAGTCAGCTATCCTCTGCTTCGTATCCCCTGTTTTCCAGTCAACAAGTAGGATACTTCCGGCCACCGGCAAACCTACCACCCGGCGGAGGCGGTGACATCGGCGGAGGGTCGGACTTTCCGGCATCAACTTGGTCAGATACCAGCGGCTTCCCTCCTCCATCCGGTTCAGGCTGA	1326	0.5611	MLFQTVAHQQGSGGFARLTAHDGAADGEEEALNKAAAAAAAEAAEVEEEEEEAVFAGYSSSRAGELTAMVSALTHVVSGSGGQRCTEWIPVAVTSAPGQPSPSSAVLSPYSSSSSSSSSSSSSASGSVLSSASGSTASLVGHKRARDQHSSVYGAFTDFRVPSQGQSSSVVEEGSNVAAGAVVETMATAEGSGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRVVPPAQNFPATRLAVSDSPATLFQQQTPNLPPPPRPHPPLQPPFFQSPSFQTPSDSIRDYWEYSQLLQSSDDFLQHQQQQQQHSNLLQQWIYNSQLMALQSSSMLLSSSSSPLSSSSSPTAFSPSSQLSSASYPLFSSQQVGYFRPPANLPPGGGGDIGGGSDFPASTWSDTSGFPPPSGSG	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g0997	441	Pfam	AP2 domain	198	247	IPR001471	GO:0003700\|GO:0006355
	Prci1g0997	441	MobiDBLite	consensus disorder prediction	424	441	-	-
	Prci1g0997	441	MobiDBLite	consensus disorder prediction	96	133	-	-
	Prci1g0997	441	SMART	rav1_2	198	261	IPR001471	GO:0003700\|GO:0006355
	Prci1g0997	441	MobiDBLite	consensus disorder prediction	403	441	-	-
	Prci1g0997	441	Coils	Coil	29	52	-	-
	Prci1g0997	441	PRINTS	Ethylene responsive element binding protein signature	221	237	IPR001471	GO:0003700\|GO:0006355
	Prci1g0997	441	PRINTS	Ethylene responsive element binding protein signature	199	210	IPR001471	GO:0003700\|GO:0006355
	Prci1g0997	441	FunFam	Ethylene-responsive transcription factor 2	197	256	-	-
	Prci1g0997	441	PANTHER	DNA-BINDING DOMAIN	125	353	IPR044808	GO:0003700\|GO:0009873
	Prci1g0997	441	CDD	AP2	206	257	IPR001471	GO:0003700\|GO:0006355
	Prci1g0997	441	ProSiteProfiles	AP2/ERF domain profile.	198	255	IPR001471	GO:0003700\|GO:0006355
	Prci1g0997	441	SUPERFAMILY	DNA-binding domain	198	256	IPR016177	GO:0003677
	Prci1g0997	441	MobiDBLite	consensus disorder prediction	367	389	-	-
	Prci1g0997	441	MobiDBLite	consensus disorder prediction	279	310	-	-
	Prci1g0997	441	Gene3D	AP2/ERF domain	197	257	IPR036955	GO:0003700\|GO:0006355
	Prci1g0997	441	MobiDBLite	consensus disorder prediction	285	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g0997	Prci-Chr1	13322862	13324888	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g0997	185	269	AP2-EREBP Transcription Factor Family	AT2G33710	70.588	5.22e-36	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Prci1g0997		AP2	8.9e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g0997	-		-	pcin:129292679	254.603