LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g0990	ATGGGCTCTCACCAGGTTAAGTCATCTAGGCCCTCTGGGAGGTTCGAATTACAGAATGGGTATGCCGGAGATGATGACTTTATTGCTCATAGACGATCCACGGGGCGGAAATTTGATCGGACGGAGTATGGCCGGCAAAACCAGCGCGAACCCAGGGAGCACCAGGTTGAGTCTGGTATGGGCAATGACAAAAGACAGGATGGTGGCGTTGCTGGTCCTGAAAGAGTTAAAGAGAAGGGGAGATTGAATAACAGAGAGGGAAAGAAGCATGCTGTGCGTAATATTTCGAAGGTATCAAGGAAGTCTTTCGAAGATGAGATGGTTGATGGATGGCCCAAATGGCTAGTTGATAACGTTCCAAAGGAAGCATTGGCTGGTTTGGTTCCCAAGAGTGCTGAATCGTACATTATGATCAATAAGGTAGGGCAGGGAACTTATAGCAATGTTTATAAAGCTCGAGATCGAAACACTGGAGAATCAGTGGCCCTCAAGAAGGTGCGCCTTGACACATCCAGGCCTGAATGCATTAAATTCATGGCAAGAGAAATTATGATATTACGGGGATTGGATCATCCCAATGTAGTAAAACTCAAGGGATTGGCTACTTCAAGAATGCATTATAGTCTTTATCTTGTTTTTGACTTCATGCAATCAGACTTGGCCAGGATAGTTTCTTGTCCCGAAGAGAGACTAACTGAACCACAGGTCAAGGCCTATATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATAGGGGCATTTTGCATAGAGATATCAAAGGGTCAAACCTTTTGATTGATAAAAGTGGGATGCTTAAGATTGCAGATTTTGGGCTTGCCAATTATTATAATCCCAACCATAACCAGCCTCTCACAAGCAGGGTTGTGACACTATGGTACAGAGCTCCTGAATTGTTGCTAGGTGCCACAGATTATGGAGTTGGTATTGATCTATGGAGTGCCGGATGCCTCCTGGCAGAAATGTTTACAGGGGTTCCAATTATGCCTGGCAGAACAGAGGTGGAGCAACTTCATAGAATTTTCAGGCTATGTGGTACACCATCAGAGGGTTATTGGAAGAAATTCAAAGCTGCTGGGACTTTTAGGCCTCCAAAGTCTTATAGACCCTGCCTTGTAGAGACTTTCAAAGATTTCCCTTCATCTTCTTTGGGTCTATTATGTACTCTACTTGCCTTGGACCCTGCTTACCGTGGAACTGCCTCTAAAGCTCTCCAAAATCAATTTTTCTATACAAGTCCACTAGCATGTGACCTCTCTGGTCTTCCTGTGATCTGCGTTGAAGATGAAGAGCAAGATCAAGCCGATGAACAAATGAAGCGCATGAATTCTAAAATTAGACGCTCCCATACATTACTCGAGCGTCGTAGAAAGAGTCTGGTATCTGAAAAGCCAGCAGAAGCCACTATGTCTTCTAAAGAAGAATCAAGACAGAATGCTGATACATACGTCCCACTTGACGAACTGGGCAGCACAACCAGTAGTACCTCATCAAGTTTAAATCGAACTGAGGCAAAGGATTCTTCACCTATCTTCTCTCCAGATGTGTCCTCAGATCAAAAGCTGCTCCTCAGAACAAATCGCGATGATAATGGTGGTGAAAACATTGATAAATTTCCTCCTTTACCGAAGTCAAAACCTCGTGCAGCCAGGGGAGAAGATGCTCAATACAGATTTTGCCCAGCCCGCAGGTCTACTTCCGCCAGAGATTTCAGAATCTCAAGACAAAAGGACCGTTTACTCCTTGAAACAGATGATCAGACTGCCATAGATGACACGTAA	1803	0.4454	MGSHQVKSSRPSGRFELQNGYAGDDDFIAHRRSTGRKFDRTEYGRQNQREPREHQVESGMGNDKRQDGGVAGPERVKEKGRLNNREGKKHAVRNISKVSRKSFEDEMVDGWPKWLVDNVPKEALAGLVPKSAESYIMINKVGQGTYSNVYKARDRNTGESVALKKVRLDTSRPECIKFMAREIMILRGLDHPNVVKLKGLATSRMHYSLYLVFDFMQSDLARIVSCPEERLTEPQVKAYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKSGMLKIADFGLANYYNPNHNQPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGVPIMPGRTEVEQLHRIFRLCGTPSEGYWKKFKAAGTFRPPKSYRPCLVETFKDFPSSSLGLLCTLLALDPAYRGTASKALQNQFFYTSPLACDLSGLPVICVEDEEQDQADEQMKRMNSKIRRSHTLLERRRKSLVSEKPAEATMSSKEESRQNADTYVPLDELGSTTSSTSSSLNRTEAKDSSPIFSPDVSSDQKLLLRTNRDDNGGENIDKFPPLPKSKPRAARGEDAQYRFCPARRSTSARDFRISRQKDRLLLETDDQTAIDDT	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	1	15	-	-
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	1	93	-	-
	Prci1g0990	600	SMART	serkin_6	135	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	442	578	-	-
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	25	61	-	-
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	68	93	-	-
	Prci1g0990	600	FunFam	Putative serine/threonine-protein kinase	218	455	-	-
	Prci1g0990	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Prci1g0990	600	Pfam	Protein kinase domain	137	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g0990	600	ProSiteProfiles	Protein kinase domain profile.	135	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g0990	600	Gene3D	Phosphorylase Kinase; domain 1	122	217	-	-
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	479	528	-	-
	Prci1g0990	600	FunFam	probable serine/threonine-protein kinase At1g54610	122	217	-	-
	Prci1g0990	600	SUPERFAMILY	Protein kinase-like (PK-like)	130	421	IPR011009	-
	Prci1g0990	600	ProSitePatterns	Protein kinases ATP-binding region signature.	141	164	IPR017441	GO:0005524
	Prci1g0990	600	PANTHER	CELL DIVISION PROTEIN KINASE	133	422	-	-
	Prci1g0990	600	MobiDBLite	consensus disorder prediction	442	478	-	-
	Prci1g0990	600	Gene3D	Transferase(Phosphotransferase) domain 1	218	458	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g0990	Prci-Chr1	12851551	12857094	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g0990	130	459	Core Cell Cycle Gene Families	AT5G10270	43.804	9.62e-94	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Prci1g0990		Pkinase	3.4e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g0990	K08819		-	gmx:100776854	746.888