Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1g0950 | ATGACTCCTTGCAAGAATAAGGTTGTGTTCATAATGGGATCGACAGGCACAGGAAAAACCAAGCTTTCGATTGACCTAGGCTCACATTTCCCTTCTGAAATCATTAACGCTGACAAGATCCAAGTTTACAAGGGTTTGGACATCATCACCAACAAGATCCCAGAATCACAACGACGAGGAATCCCCCACCACCTCCTCGGAATCATCGAAGATCCCGACTTTGACTTCAATCCCACCCATTTCTGCGACCATGTCATCTCTGCAATCGAACATATCACCAAACAAGGACACATACCCATCATCGTCGGAGGCTCCAACACCTACCTCGAATGCCTTGTGGAAGATCCCACCTTAGACTTTCGTTCCAAATATGATTGTTGCTTCCTCTGGCTTGACGTGTCTCTGGATGTCCTCTTTCCGTATCTGGACAAAAGGGTTGATGAAATGGTGGACGCAGGGCTTGTGGATGAGACTAGAGAGTACTTCATGCCTGGGGCTGACTATTCTGCTGGAATCAGAAGAGCAATTGGTGCTGTTGAATTGGACGAGTATTTTAAGGTTGAGAGTGATCTTAATGTTGACGATAGTTACAAGCAAGAGTTGCTCAAAGACGCTCTTCAAAGAATGAAAAAGAACACTCATACACTGGCTCAAGTGCAACTTTCAAAGATACGTCGAATCAATAATGAGCTTTCCTGGGGATTGCATCGTATTGATGCTACTAAGGTATTTGAGGCTGTTCTGAATGGCAATGCGTATCAGAATTTGTGGAAAGATATTGTTTTTAATCCAAGTAAGGAGATTGTTAGGAGATTT | 816 | 0.4375 | MTPCKNKVVFIMGSTGTGKTKLSIDLGSHFPSEIINADKIQVYKGLDIITNKIPESQRRGIPHHLLGIIEDPDFDFNPTHFCDHVISAIEHITKQGHIPIIVGGSNTYLECLVEDPTLDFRSKYDCCFLWLDVSLDVLFPYLDKRVDEMVDAGLVDETREYFMPGADYSAGIRRAIGAVELDEYFKVESDLNVDDSYKQELLKDALQRMKKNTHTLAQVQLSKIRRINNELSWGLHRIDATKVFEAVLNGNAYQNLWKDIVFNPSKEIVRRF | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1g0950 | 272 | PANTHER | TRNA DIMETHYLALLYLTRANSFERASE | 5 | 272 | IPR039657 | - | |
| Prci1g0950 | 272 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 162 | IPR027417 | - | |
| Prci1g0950 | 272 | Gene3D | Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 135 | 235 | - | - | |
| Prci1g0950 | 272 | Gene3D | - | 5 | 272 | IPR027417 | - | |
| Prci1g0950 | 272 | FunFam | Adenylate isopentenyltransferase 5, chloroplastic | 135 | 235 | - | - | |
| Prci1g0950 | 272 | Pfam | IPP transferase | 121 | 225 | - | - | |
| Prci1g0950 | 272 | Pfam | IPP transferase | 41 | 115 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci1g0950 | Prci-Chr1 | 12163462 | 12170469 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1g0950 | 122 | 272 | C2H2 Transcription Factor Family | AT2G27760 | 32.386 | 3.81e-22 | 93.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1g0950 | K10760 | - | gmx:121173984 | 372.089 |