Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0925 ATGGCGGGAGCTACAGGCAGAGCCCTTCTTACTCTCTCTCTAAACTCCAACCTCTTACCACTCGCACGCTTATCTCATGGCCACACCATTCCATTTCTCAAACTGTCAGCAAGACCCAGTAGGGTTTTGCTAGGGTTTAGGCCCCTCTGCTCTGCCACTACCACCGCCACGGCCACCGTTGCCGACACGACGGAGTCCATTGACCCCGACCAAATCAAGCATTCAATTCTTCTTGGGAGACTCAGATTCAAACACCTCAAGGATTCCGCTAAAACCCCTGAAATCAAGAATTCAACGAAGTCAGTTGCTATATCTGAGAAGGGTCGTGAGAATGAGGGGAAGAAGTCAGAGGAGAAGAAGTTGGTTGGAAGTTTTGAGGAGTTGGGCCTCAGTGATGAGGTAATGGGAGCCGTGAAGGAGATGAATATTGAGGTTCCTACTGAGATTCAGTGTATCGGTATCCCTGCTGTCTTGGAAGAGAAGAGTGTCGTTTTGGGATCTCATACTGGGTCTGGCAAGACTCTTGCTTACATGCTTCCTCTGGTTCAGTTGCTTAGACGGGATGAACAATTGAATGGATTGCATATGAAGCCCAGGCGTCCCCGAGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATTAGCCATCATGCAAGGTTTAGGTCTACAATGGTAAGTGGGGGTGGCCTTATCAGGCCTCAGGAGGATTCATTAAATAACCCCATTGACATGGTTGTTGGTACTCCGGGCAGAATTTTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTGTTGGATGAGGCAGACACGATGTTTGATCGAGGTTTTGGTCCTGATATACGCAAGTTTATAGGCCCACTAAAACATCGCACATCAAAACCTGATGGCCTGGGTTTTCAGACTATTTTGGTTACAGCAACCATGACAAAGGCAGTGCAGAAGTTGATCGATGAGGAGTTTCAAGGCATTGTGCACCTGCGAACATCAACGCTGCATAAAAAGATTGCCTCTGCACGTCATGATTTTATTAAGTTGTCAGGTTCTGAGAACAAGCTGGAGGTATTACTGCAGGTTCTGGAGCCGAGCCTTGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACACTGGATTCTAGCCGTGCAGTGGATCATTTTCTTGGTGAAAATCAGATATCTACTGTTAATTACCATGGAGAGGTACCAGCAGAGCGAAGGGTTGAAAACCTCAAGAAGTTTAAGAGTGATGAAGATGATTGCCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCTTTGACCTCTATTGATTACCTTCACCGCACTGGTAGAACAGCTCGCATGGGTGCAAAGGGGAAAGTAACTAGCTTGGTTGCAAAAAAAGACGTAACCCTGGCCACTAGAATAGAAGAAGCAATAAGGAAAAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTCTCAGGAGGGAGATTGCCAGTACCCAAATAACTCGGCAGAAGGGGAAGAATACAAAATTGGTAAAGGTTTCCAAAGCAAAGAACACTTCTACTCCCCGTGCTGCCATGTCTCGGAAAGTATCGAAGAAGCCATCAGTATCCAAAGCATCAAAAAGTTCTTCTGGTGTTAATACTGTTTCTAGAAAAACATCCAAGCCATTAAAACCAGGGAAGTCAGGAGGAGGAATTAAGGTTAAAAGTTCTGTAAGGTCTTCCAGTGCAAGTAGCCTGAAAAAGTTTCAGCGAGGAAGGCACAAACAAGTAAAAGAGATAGTGCTGGAAAATCCTCAAATTCTAAGCTGA 1884 0.4538 MAGATGRALLTLSLNSNLLPLARLSHGHTIPFLKLSARPSRVLLGFRPLCSATTTATATVADTTESIDPDQIKHSILLGRLRFKHLKDSAKTPEIKNSTKSVAISEKGRENEGKKSEEKKLVGSFEELGLSDEVMGAVKEMNIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEQLNGLHMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGLIRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRTSKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEVLLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAERRVENLKKFKSDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPLTSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAIRKNESLEAISKESLRREIASTQITRQKGKNTKLVKVSKAKNTSTPRAAMSRKVSKKPSVSKASKSSSGVNTVSRKTSKPLKPGKSGGGIKVKSSVRSSSASSLKKFQRGRHKQVKEIVLENPQILS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0925 627 MobiDBLite consensus disorder prediction 526 615 - -
Prci1g0925 627 Pfam Helicase conserved C-terminal domain 366 477 IPR001650 -
Prci1g0925 627 CDD DEADc 134 333 - -
Prci1g0925 627 MobiDBLite consensus disorder prediction 103 118 - -
Prci1g0925 627 MobiDBLite consensus disorder prediction 560 579 - -
Prci1g0925 627 SMART helicmild6 395 477 IPR001650 -
Prci1g0925 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 488 IPR027417 -
Prci1g0925 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 341 IPR014001 -
Prci1g0925 627 SMART ultradead3 142 361 IPR014001 -
Prci1g0925 627 Pfam DEAD/DEAH box helicase 147 330 IPR011545 GO:0003676|GO:0005524
Prci1g0925 627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 516 IPR001650 -
Prci1g0925 627 Coils Coil 497 517 - -
Prci1g0925 627 CDD SF2_C_DEAD 354 486 - -
Prci1g0925 627 Gene3D - 351 579 IPR027417 -
Prci1g0925 627 MobiDBLite consensus disorder prediction 90 118 - -
Prci1g0925 627 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 66 513 - -
Prci1g0925 627 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Prci1g0925 627 MobiDBLite consensus disorder prediction 526 550 - -
Prci1g0925 627 Gene3D - 85 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0925 Prci-Chr1 11735498 11740288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0925 122 499 Eukaryotic Initiation Factors Gene Family AT3G19760 27.225 7.61e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0925 - - pcin:129297913 1063.14