Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0924 ATGGCGGGAGCTACAGGCAGAGCCCTTCTTACTCTCTCTCTAAACTCCAACCTCTTACCACTCGCACGCTTATCTCATGGCCACACCATTCCATTTCTCAAACTGTCAGCAAGACCCAGTAGGGTTTTGCTAGGGTTTAGGCCCCTCTGCTCTGCCACTACCACCGCCACGGCCACCGTTGCCGACACGACGGAGTCCATTGACCCCGACCAAATCAAGCATTCAATTCTTCTTGGGAGACTCAGATTCAAACACCTCAAGGATTCCGCTAAAACCCCTGAAATCAAGAATTCAACGAAGTCAGTTGCTATATCTGAGAAGGGTCGTGAGAATGAGGGGAAGAAGTCAGAGGAGAAGAAGTTGGTTGGAAGTTTTGAGGAGTTGGGCCTCAGTGATGAGGTAATGGGAGCCGTGAAGGAGATGAATATTGAGGTTCCTACTGAGATTCAGTGTATCGGTATCCCTGCTGTCTTGGAAGAGAAGAGTGTCGTTTTGGGATCTCATACTGGGTCTGGCAAGACTCTTGCTTACATGCTTCCTCTGGTTCAGTTGCTTAGACGGGATGAACAATTGAATGGATTGCATATGAAGCCCAGGCGTCCCCGAGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATTAGCCATCATGCAAGGTTTAGGTCTACAATGGTAAGTGGGGGTGGCCTTATCAGGCCTCAGGAGGATTCATTAAATAACCCCATTGACATGGTTGTTGGTACTCCGGGCAGAATTTTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTGTTGGATGAGGCAGACACGATGTTTGATCGAGGTTTTGGTCCTGATATACGCAAGTTTATAGGCCCACTAAAACATCGCACATCAAAACCTGATGGCCTGGGTTTTCAGACTATTTTGGTTACAGCAACCATGACAAAGGCAGTGCAGAAGTTGATCGATGAGGAGTTTCAAGGCATTGTGCACCTGCGAACATCAACGCTGCATAAAAAGATTGCCTCTGCACGTCATGATTTTATTAAGTTGTCAGGTTCTGAGAACAAGCTGGAGGTTCTGGAGCCGAGCCTTGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACACTGGATTCTAGCCGTGCAGTGGATCATTTTCTTGGTGAAAATCAGATATCTACTGTTAATTACCATGGAGAGGTACCAGCAGAGCGAAGGGTTGAAAACCTCAAGAAGTTTAAGAGTGATGAAGATGATTGCCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCTTTGACCTCTATTGATTACCTTCACCGCACTGGTAGAACAGCTCGCATGGGTGCAAAGGGGAAAGTAACTAGCTTGGTTGCAAAAAAAGACGTAACCCTGGCCACTAGAATAGAAGAAGCAATAAGGAAAAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTCTCAGGAGGGAGATTGCCAGTACCCAAATAACTCGGCAGAAGGGGAAGAATACAAAATTGGTAAAGGTTTCCAAAGCAAAGAACACTTCTACTCCCCGTGCTGCCATGTCTCGGAAAGTATCGAAGAAGCCATCAGTATCCAAAGCATCAAAAAGTTCTTCTGGTGTTAATACTGTTTCTAGAAAAACATCCAAGCCATTAAAACCAGGGAAGTCAGGAGGAGGAATTAAGGTTAAAAGTTCTGTAAGGTCTTCCAGTGCAAGTAGCCTGAAAAAGTTTCAGCGAGGAAGGCACAAACAAGTAAAAGAGATAGTGCTGGAAAATCCTCAAATTCTAAGCTGA 1872 0.4541 MAGATGRALLTLSLNSNLLPLARLSHGHTIPFLKLSARPSRVLLGFRPLCSATTTATATVADTTESIDPDQIKHSILLGRLRFKHLKDSAKTPEIKNSTKSVAISEKGRENEGKKSEEKKLVGSFEELGLSDEVMGAVKEMNIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEQLNGLHMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGLIRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRTSKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAERRVENLKKFKSDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPLTSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAIRKNESLEAISKESLRREIASTQITRQKGKNTKLVKVSKAKNTSTPRAAMSRKVSKKPSVSKASKSSSGVNTVSRKTSKPLKPGKSGGGIKVKSSVRSSSASSLKKFQRGRHKQVKEIVLENPQILS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0924 623 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 66 509 - -
Prci1g0924 623 CDD DEADc 134 333 - -
Prci1g0924 623 MobiDBLite consensus disorder prediction 556 575 - -
Prci1g0924 623 MobiDBLite consensus disorder prediction 522 611 - -
Prci1g0924 623 MobiDBLite consensus disorder prediction 103 118 - -
Prci1g0924 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 341 IPR014001 -
Prci1g0924 623 CDD SF2_C_DEAD 354 482 - -
Prci1g0924 623 Gene3D - 343 575 IPR027417 -
Prci1g0924 623 SMART ultradead3 142 361 IPR014001 -
Prci1g0924 623 Pfam DEAD/DEAH box helicase 147 330 IPR011545 GO:0003676|GO:0005524
Prci1g0924 623 SMART helicmild6 391 473 IPR001650 -
Prci1g0924 623 Coils Coil 493 513 - -
Prci1g0924 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 512 IPR001650 -
Prci1g0924 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 497 IPR027417 -
Prci1g0924 623 Pfam Helicase conserved C-terminal domain 369 473 IPR001650 -
Prci1g0924 623 MobiDBLite consensus disorder prediction 92 118 - -
Prci1g0924 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 336 IPR027417 -
Prci1g0924 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Prci1g0924 623 Gene3D - 85 342 IPR027417 -
Prci1g0924 623 MobiDBLite consensus disorder prediction 522 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0924 Prci-Chr1 11735496 11740288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0924 122 495 Eukaryotic Initiation Factors Gene Family AT3G19760 27.368 5.72e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0924 - - pcin:129297913 1052.35