Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0901 ATGACGGTGGCGTCGGATTCTTCTCCAGAGTGTTTCAGCCGGATGATGGCTTCGATGCCGGGGTTTCGGTTCCATCCTACCGATGAGGAACTAGTCATGTACTATCTGAAGAGGAAGATGTGTAGGAGGAAGCTGAAGCTCGATGTAATTCGTGAAATTGATGTCTACAAGTGGGATCCTGAGGAATTGCCTGGGCAGTCAGTGCTGAAAACTGGAGATAGGCAATGGTTCTTTTTCAGCCCTAGAGATAGAAAGTATCCTAATAGTGGCAGGACTAATCGAGCAACAAGATATGGATACTGGAAAGCAACAGGAAAAGATCGTAACATTACCTACAATTCTCGGACAGTTGGGGTGAAAAAGACCCTGGTTTTCTATAGAGGTAGAGCACCACATGGTGAGCGAACTGATTGGGTTATGCATGAGTACACATTAGAAGAAGAAGAAGTTGCAAGATGCCAAAATTTTAAGGACTATTATGCCCTTTACAAGGTGTTCAAGAAAAGCGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCGCCATTTATAGAAGAAGAATGGGGAGATGATGACTTTGTAGATGTTAATGTTAATTCAGCTGATGAGGCTCCAATTTCACAAGTTGATGAGGGTCCTTCTGTTCACACTGGGACTTGTAATGGTCAAGCGCAGCCTTTGTTTGATCTTGACCTTGATGAGGTCTTGAAAAGAATGATGGATGAGCTGGTTCCTGACCTGCCTTCACTGTGTCCTGCCTTACCTCAGGTTCCTGCTGAAGATGTGCTCGATCAAATTTCAAAGGAAAGTGACAATTGCAGAGCCAATCAAAATGTTTCATTCAAGCGGTCATTGCTATGA 861 0.4402 MTVASDSSPECFSRMMASMPGFRFHPTDEELVMYYLKRKMCRRKLKLDVIREIDVYKWDPEELPGQSVLKTGDRQWFFFSPRDRKYPNSGRTNRATRYGYWKATGKDRNITYNSRTVGVKKTLVFYRGRAPHGERTDWVMHEYTLEEEEVARCQNFKDYYALYKVFKKSGPGPKNGEQYGAPFIEEEWGDDDFVDVNVNSADEAPISQVDEGPSVHTGTCNGQAQPLFDLDLDEVLKRMMDELVPDLPSLCPALPQVPAEDVLDQISKESDNCRANQNVSFKRSLL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0901 286 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Prci1g0901 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 199 - -
Prci1g0901 286 Gene3D NAC domain 27 171 IPR036093 GO:0003677|GO:0006355
Prci1g0901 286 SUPERFAMILY NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
Prci1g0901 286 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Prci1g0901 286 FunFam Nac domain-containing protein 86 27 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0901 Prci-Chr1 11249325 11252291 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0901 5 263 NAC Transcription Factor Family AT1G34190 61.069 5.39e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g0901 NAM 3.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0901 - - pcin:129320978 590.112