Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0892 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTGTCATTCAGATTAGTAATCGATAGGGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAATATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGCAACCTTCAGGGTTATGAGATTAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCAACAAATGTTGACCATCAGAAACAACTAGCTGGGCCTGTTGTCCATGGGGAAGCTGCTCACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACCGTCATGGCAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCCGGCAAATCAAAATGGTTTGCAGGGTCAGTCTGGATTGACCCATGACCCTTTAACTCTGCATCTGGCCAAACTATCCAGGAATCAGTTGACTGAGATCATCTCTGAGCTCAAGGCAATGGCTACACATAACAAGGAGTCAGCTCGTCAGTTGTTGCTTTCTAGACAGCAGTTACCTAAGGCTCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCGCAAGTGTTACAAATGCCAAACCTTAGGCAAGTTGCAGGTGAAACCTCACAGCCTCCAGTAGATGAAAGCCAGCTAAGTCAGTCAGCAGTTCTTCAAACGCTATCTGGGCTGCCTTCTCATGCGCAGATCAAGTTGCAGTCTAGCTTGATACCCAATAGTCAAGAAGCTCAAGTCGGCTCTTTACATCATAATTCTTTGGTTCCTAATCAACTAACTGCACACGCAAAGCCTCCTTTGCAGCCTCGAATGCTGCTTCCACAACATTTAAGCAACCCTTTGCAGCCAGGGCATTCTAGTTCATCACTTCCTTCTGTTCGCCCACAGTCTTTATTCAGTTTGCCTGTTAGACCACCAAATCAGCCCAGTTTGTCTATTGGACCACCAGTTCAGCTGGCAACATCAACTTCTCTGAATCAGCAAATGCATTTGTTGCAGCATTCAGGGAAGATTGGTAACTCAAGTGTAGGACAAAATATTTGGATGATTCGTCCAGATGCAAGCTTTCAGCCTGGCCCATCCATTTCATCAGGCATTCCTCAGTCAATTGGTCGGGAAGCTGACAGGTCAGCTAAAGTTATTGAAGATTCTAGTTGGGCCAAGAAAAGTAGTCCATATTCAAACATTCCTCATGGATCAGGAGAGAAAGCAAACGAGTCTTCAGAACCATTTAGCCATCCTGCAAAGCTGATTAAATTGGATGATGGAAGGAACTCCTCTTTCTCCACAGGAGTCACAAATGCGCCTGTTTCCAAGGGATCTTCCCAAGTTCTTGGAAGTGGCTCATTGCCTGTAAATGCATCTTCCAAATCAGAAGCGCGATACCCTGAGCAACAATCCTCTCAGCCTCAGCTTCCACCTGACGTGGAATCGGTTTTACTGGCAACAAGTATTGAGTTTACGCCGGAGCAATTGAGTTCCTTGCCACCGGAGCAGCAACAGCAGGTGTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGATCCAGCCCTCATAG 1665 0.4691 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLATNVDHQKQLAGPVVHGEAAHHQPIGLHIAITAATVMAAALGGPQSGIPANQNGLQGQSGLTHDPLTLHLAKLSRNQLTEIISELKAMATHNKESARQLLLSRQQLPKALFQAQIMLGMVTPQVLQMPNLRQVAGETSQPPVDESQLSQSAVLQTLSGLPSHAQIKLQSSLIPNSQEAQVGSLHHNSLVPNQLTAHAKPPLQPRMLLPQHLSNPLQPGHSSSSLPSVRPQSLFSLPVRPPNQPSLSIGPPVQLATSTSLNQQMHLLQHSGKIGNSSVGQNIWMIRPDASFQPGPSISSGIPQSIGREADRSAKVIEDSSWAKKSSPYSNIPHGSGEKANESSEPFSHPAKLIKLDDGRNSSFSTGVTNAPVSKGSSQVLGSGSLPVNASSKSEARYPEQQSSQPQLPPDVESVLLATSIEFTPEQLSSLPPEQQQQVLQLQQALRRDQIQPS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0892 554 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 550 - -
Prci1g0892 554 FunFam Cleavage stimulating factor 64 1 116 - -
Prci1g0892 554 MobiDBLite consensus disorder prediction 465 512 - -
Prci1g0892 554 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 228 IPR025742 -
Prci1g0892 554 MobiDBLite consensus disorder prediction 525 554 - -
Prci1g0892 554 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Prci1g0892 554 Gene3D - 515 552 IPR038192 -
Prci1g0892 554 Gene3D - 155 230 - -
Prci1g0892 554 FunFam Cleavage stimulating factor 64 155 230 - -
Prci1g0892 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Prci1g0892 554 SMART rrm1_1 8 81 IPR000504 GO:0003723
Prci1g0892 554 MobiDBLite consensus disorder prediction 392 447 - -
Prci1g0892 554 MobiDBLite consensus disorder prediction 315 345 - -
Prci1g0892 554 MobiDBLite consensus disorder prediction 306 345 - -
Prci1g0892 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Prci1g0892 554 MobiDBLite consensus disorder prediction 423 443 - -
Prci1g0892 554 MobiDBLite consensus disorder prediction 465 510 - -
Prci1g0892 554 MobiDBLite consensus disorder prediction 83 106 - -
Prci1g0892 554 Gene3D - 1 112 IPR012677 -
Prci1g0892 554 CDD RRM_CSTF2_RNA15_like 7 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0892 Prci-Chr1 10936197 10946036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0892 9 148 Eukaryotic Initiation Factors Gene Family AT1G71770 29.286 1.17e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0892 K14407 - gmx:100806489 646.736