Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0815 ATGCCGGAGATGGTGGTGAATGCTGCTGCTAATTCCAGCTCCAACGGCGGTGCCGCCGTTGTTAATAATGGGCATCAGTTCGGTGACACCACGCTCACCAAAGTGTTTGTTGGAGGACTGGCTTGGGAGACTCCGAAGGACGCCATGAGAGAGCATTTTCAGAAGTACGGCGAGATCCTCGAGGCCGTCATTATCTCCGATAAGGCCACCGGCAGATCCAAGGGCTATGGCTTCGTGACATTTAAGGAAGCTGAAGCTGCTAAGAAGGCCTGTGAGGATCCTACGCCGATCATCAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTCGGCGCGCGACGCCCAAGGTCCACCAACACTTCGCCGCCTCGTCAACAAGGATCGAACGGCGGAGGACAAAGGAACGCCCAGAGCGCCCCACCACCGCCAGCCAATCACGTCCAGTGGTATTATCCGGTGGGGTCACCTGCTTCACATTTCCACCATCACCACCCCCATCAGCCAGTTCCTCTCTATGGGTATACCCCAACGTACATTCCAACTGACATCAACTACAACCAGAAGCTGAGCTACACTGGCGGTGGGCCCTATATGAATGGTTACTACTCTCCAATGTACCCGAGTCAGGCTATGGTGGGCGGTGGGAACACAATGATGCCCATGTACCCTGTTTATCAGTACCATCAAACGCACACGGTGGGACTATCTGCCCACATATTCCAACCAACCACGGCTGGGCACGTGGCCATCATGTCGAAGCCCGCGTCCATGACTCCTAACACAGTTTGTTTGGGTGTGGAATAG 804 0.5535 MPEMVVNAAANSSSNGGAAVVNNGHQFGDTTLTKVFVGGLAWETPKDAMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPIINGRRANCNLASLGARRPRSTNTSPPRQQGSNGGGQRNAQSAPPPPANHVQWYYPVGSPASHFHHHHPHQPVPLYGYTPTYIPTDINYNQKLSYTGGGPYMNGYYSPMYPSQAMVGGGNTMMPMYPVYQYHQTHTVGLSAHIFQPTTAGHVAIMSKPASMTPNTVCLGVE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0815 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 92 IPR000504 GO:0003723
Prci1g0815 267 MobiDBLite consensus disorder prediction 111 142 - -
Prci1g0815 267 SUPERFAMILY RNA-binding domain, RBD 29 135 IPR035979 GO:0003676
Prci1g0815 267 CDD RRM_RBM24_RBM38_like 33 108 - -
Prci1g0815 267 MobiDBLite consensus disorder prediction 110 148 - -
Prci1g0815 267 PANTHER BOULE-RELATED 9 244 - -
Prci1g0815 267 SMART rrm1_1 34 106 IPR000504 GO:0003723
Prci1g0815 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
Prci1g0815 267 FunFam Putative RNA-binding protein ARP1 27 116 - -
Prci1g0815 267 Gene3D - 25 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0815 Prci-Chr1 9128480 9132337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0815 2 109 C2H2 Transcription Factor Family AT2G19380 35.135 2.67e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0815 - - cave:132187501 333.183