Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0811 ATGGAGCAGGAGCACGAAGAGCATGAAGTGTACGGAGGCGATATTCCCGACGAGGCGGAGATGGACGCAGATTTCAGAGTTGAAGAAGAAGAAGAACAGGAAGGACACCAACATGACCCCAATAACTCTAATAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAGATTGAGGAAGAAGCTAGTGCCCTTCGTGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCGACTGGTTCTTCTGCGAGTCAAGCTGAGAAGGAGGAAGTGGATTCCCGGTCAATCTATGTTGGTAATGTTGACTATGGATGTACGCCTGAAGAAGTCCAGCAACATTTTCAGTCTTGTGGAACAGTGAACAGAGTGACGATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCATATGTTGAGTTTGTTGAGGTTGATGCCGTTCAGAATGCTCTCTTGTTGAATGAATCAGAGTTGCATGGCCGTCAATTGAAGGTCTCTGCTAAGCGTACAAACGTTCCTGGAATGAAACAGTATCGTGGAAGAAGACCTATGGGCTTTCGACCTAGAATGCCTTACATGCCTTCTCCGTTCTATCCTCCATATGGTTATGGGAGAGTTCCAAGGTATAGGCGTCCAACGCGTTACAGGCCATACTAG 666 0.4625 MEQEHEEHEVYGGDIPDEAEMDADFRVEEEEEQEGHQHDPNNSNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYGCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPMGFRPRMPYMPSPFYPPYGYGRVPRYRRPTRYRPY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0811 221 Gene3D - 17 180 IPR012677 -
Prci1g0811 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Prci1g0811 221 CDD RRM_II_PABPs 98 169 - -
Prci1g0811 221 MobiDBLite consensus disorder prediction 1 15 - -
Prci1g0811 221 Coils Coil 40 74 - -
Prci1g0811 221 MobiDBLite consensus disorder prediction 30 73 - -
Prci1g0811 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 18 194 - -
Prci1g0811 221 MobiDBLite consensus disorder prediction 1 96 - -
Prci1g0811 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Prci1g0811 221 SMART rrm1_1 98 169 IPR000504 GO:0003723
Prci1g0811 221 SUPERFAMILY RNA-binding domain, RBD 87 199 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0811 Prci-Chr1 9057385 9066553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0811 98 169 Eukaryotic Initiation Factors Gene Family AT2G36660 35.526 2.89e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0811 K14396 - qsa:O6P43_008768 317.775