Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0796 ATGGCTGTGTCTGTGTCTTGTTTCTTCTTGTTTCAGTTTATGGCTCTCTCTTTCTCTGCCATGGCCTCTCTTGCTTTTGATAATGATTGGCATGATGCTCATGCAACTTTCTATGGTGACATGTCTGGAGGCGAAACCATGCAAGGAGCTTGTGGTTATGGAGACCTCTTCAAGCAAGGCTATGGCCTGGAGACGGCAGCCCTAAGCACAGCTCTCTTCAACAATGGCCTCACCTGCGGCGCCTGCTTCGAGCTCGAGTGCGTCAACGACCCTCAGTGGTGCATCTCCGGCGCCGGCACCATCAAGATCACCGCCACCAACTTCTGTCCACCCAACCACTCTCCTCCTGACGTCAACCATTGGTGCAACCCTCCCCAGCAACACTTCGACCTCTCCATGCCCATGTTTGTCAAGCTCGCCCCCTACAAGGCCGGCATCATCCCCGTCCGCTACCGCCGCATCGCCTGCGCCAAGTCCGGCGGCGTCAAGTTCGAGCTCAAGGGCAATCCTTATTGGATAACGGCGCTGTTTTTCAACGTGGCCAACGCCGGCGACATCACCAACGCCAAGATCAGAGGCGGTAACGGCGGTGGCGGGTGGATTCAGATGTCGAGGAATTGGGGTCAGTTGTGGCAGACGGGGACGAACTTGGTGGGACAGAGTTTGTCGTTTCAGGTTACTACAAGTGATGGGAAGACGTTGGAGTTTGATAACGTTGCGCCGTCGAATTGGCAGTTTGGTCAGACTTATGAGGGAAATCAGAACTTTTAA 771 0.5447 MAVSVSCFFLFQFMALSFSAMASLAFDNDWHDAHATFYGDMSGGETMQGACGYGDLFKQGYGLETAALSTALFNNGLTCGACFELECVNDPQWCISGAGTIKITATNFCPPNHSPPDVNHWCNPPQQHFDLSMPMFVKLAPYKAGIIPVRYRRIACAKSGGVKFELKGNPYWITALFFNVANAGDITNAKIRGGNGGGGWIQMSRNWGQLWQTGTNLVGQSLSFQVTTSDGKTLEFDNVAPSNWQFGQTYEGNQNF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0796 256 PANTHER EXPANSIN-A15 10 254 IPR002963 GO:0009664
Prci1g0796 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 252 IPR007117 -
Prci1g0796 256 Gene3D - 15 157 IPR036908 -
Prci1g0796 256 Pfam Lytic transglycolase 65 151 IPR009009 -
Prci1g0796 256 SMART dpbb_1 65 151 IPR007112 -
Prci1g0796 256 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Prci1g0796 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Prci1g0796 256 SUPERFAMILY PHL pollen allergen 158 252 IPR036749 -
Prci1g0796 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 161 IPR007112 -
Prci1g0796 256 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Prci1g0796 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Prci1g0796 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Prci1g0796 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Prci1g0796 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Prci1g0796 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Prci1g0796 256 CDD DPBB_EXPA_N 29 156 - -
Prci1g0796 256 Gene3D - 161 256 IPR036749 -
Prci1g0796 256 Pfam Expansin C-terminal domain 162 241 IPR007117 -
Prci1g0796 256 SUPERFAMILY Barwin-like endoglucanases 29 179 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0796 Prci-Chr1 8947020 8948963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0796 26 256 Expansin Gene Family AT5G39280 65.368 2.13e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0796 - - gmx:100789595 379.022