Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0790 ATGGCTCGGTCTGCGAGAGGTCAGCAACAAGAATTGGAAGACGACGACGAAGATCACCTGACCGGAAATGGTTCTTCTTCACTCAAAGTGAAGGTGGATGAAGCGACTAGAGAGCAGCGGGTTAACGCACATCGTTCCAAGCATTCAGAAACTGAGCAGCGAAGGAGGAGCAAGATAAATGAAAGATTTCAGATCCTGAGAGATCTCATTCCTCAAAATGATCAGAAAAGGGATAAGGCTTCTTTCTTGCTGGAGGTTATTGAGTATATTCAATTTTTACAGGAGAAATTACAAATGTATGAGCAATCTTACCAAGGGTGGAATCAGGAGCCCATGAAATTAATTCCCTGGAGAAATCATCGTGGACCTACAGAAAATGTCACATCTCAGGCTATGCAAAATGGTTCTGGTCATGAGAACAATGATCTCTCTCCATCGCTGCCCTTAAATGCACAGAATGCAATTGAATCTGACTTGTCACCGACAATTATTCAGAAGGCTGCCCCCCCTGGTTTAGCTTCTGAAGCAGTTCCCTTGGGTATGCAAATGCGGTTGGACATGTTTGATGCGGCTGTGAGCAGTGGCATTCCAACCCAGCATTTTCATGAAGCAATATCTAACTCTGAGAACACGCCTTCCCATACTCAGCCTCAGGTGTGTCTTGGGGGACCTGAGGAGGGTGCATATGATTTTCCAAATAATACATTGAAGGAACAGGATGAGCTAGCATTTGAAAGTGAGTCAGTTAGCATCTCAAGAGCCTATTCTCAAGGAATATTGGATACTTTTGTGCACGCACTGCGGTCTTCAGGTGTGGATTTATCTGAGGCCAACGTTTCAGTACAAATTGATCTAGGGAGACGATCAATTGCCTCCACATCTAGCTCAAAGGATCATGAGAACCAATTTGTGAACAATCCGGCAGTGCCATGTTCAGGAGTTGACTACTGCAGTGAGGATTCTGAACAAGCTCTTAAGAGGCTCAGAACTGAAGCGAGTTAG 1002 0.4481 MARSARGQQQELEDDDEDHLTGNGSSSLKVKVDEATREQRVNAHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQMYEQSYQGWNQEPMKLIPWRNHRGPTENVTSQAMQNGSGHENNDLSPSLPLNAQNAIESDLSPTIIQKAAPPGLASEAVPLGMQMRLDMFDAAVSSGIPTQHFHEAISNSENTPSHTQPQVCLGGPEEGAYDFPNNTLKEQDELAFESESVSISRAYSQGILDTFVHALRSSGVDLSEANVSVQIDLGRRSIASTSSSKDHENQFVNNPAVPCSGVDYCSEDSEQALKRLRTEAS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0790 333 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Prci1g0790 333 FunFam BHLH domain class transcription factor 41 113 - -
Prci1g0790 333 MobiDBLite consensus disorder prediction 31 56 - -
Prci1g0790 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Prci1g0790 333 Coils Coil 90 110 - -
Prci1g0790 333 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 330 IPR044295 GO:0003700|GO:0006351|GO:0046983
Prci1g0790 333 MobiDBLite consensus disorder prediction 124 146 - -
Prci1g0790 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 121 IPR036638 GO:0046983
Prci1g0790 333 SMART finulus 49 99 IPR011598 GO:0046983
Prci1g0790 333 Gene3D - 41 114 IPR036638 GO:0046983
Prci1g0790 333 CDD bHLH_AtBIM_like 42 118 - -
Prci1g0790 333 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0790 Prci-Chr1 8841797 8846915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0790 3 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.404 1.76e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g0790 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0790 - - gmx:100791730 425.631