Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0749 ATGGAAGAAGATCAGCTTCGACAGCAACCTCAAGGATCCATTTCATTTCCAATTCAAGGTATGGAGTCCGTGGTGGCTACAGTGAGTGGTTACCATGGAACAGAGCGATTCAACCTTATTAAGTTGATTACAAATGCTGGTGCGAATTATGTTGGCGCAATGTCAAAATCAATCACGCACCTGATTTGTTGGCGATTTGAAGGAAAGAAATATAATCTTGCTCGGAAATTCAGAATAGTTATAATAAATCACCAGTGGATTGAAGACTGCTTAAAGCAAGGAAGGCGTGTTCCAGAGGAACCTTATAGATCGAAAAGTGGAGAAGAAGTGGGGCTAATATTGCTGCAAGTTCCACTTATTGTCGAGGCAAGTAGCTTGACTAAGAATAAAGTGCTTGATCATGGGTCAGATGACATTGGCTCCAAAAATCAAACGACTGATATCAGTTCTGGATCTTCTGGAAATTCTGTCCGGGAAGTTTCTTATTTAATGAACAAGCAGGAGCCAACAACTTTTTCTTCCAGACAGTCAATGACAGCAAAAAGAAAGATCTCCAATTGTAATGGGGTGGCTACTAATGCTGGTCCTTCTCGCCACAGAAGAAGGCTTGTGAAAAAGAATATTCGAGGATTGTCAGCTCCCATACATGATTTGAGCTCTGAGGAGTACCTTAGCAGAACGGATACATTAAATACCGATGCTGCAGCCTCCTCTAGCCTTTCTGGTGGCGTCTCTTCTGATATTATTTTAGAAGGCAGAGAAGGATCAGATATTGTGTCAAATAATCAGAACATAGCTATCAATGGAGCATCAAATGCCACTGGACAAATCAATGATTCAAATGATTTATCAAGTTCAAGAATTTCAACTCTATGCGTACAAGATGCCTTGCTTACTACAGAGAAAACATCAGTAGATGATGGTTTTGAAAAATTCACAGATGGTATCCAGAATGGTAATGAGGCTAATTTACCTATTTCAACAGAGTTGTCATGTGTCATATGTTTGACGGAATTCAGCTCAACACGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATTCAGAGTTGGGTTGATCACAGGACTGCAATGGGAAAAATCTCAACATGTCCCTTGTGCAAGTCAAGGTTTGAGAGCATCATTAAATATGAGGATGCAGCCCGGGATCAAAAGATATATTCCCAAACAATCCCATGCGGCGTTCCAATCTCGGATATTATTTTTCTTATGGATCGAGAACAACCGTATTATGGTTTTGAGTCTTCACAGACAGGTGCTTGTGTTGCTTGCCGGGGGCGAGAACCTGAGGATCTGCTCATGCGTTGCCATCTTTGCCATATTCGACAAATCCATTCTTACTGCCTGGACCCTCCTTTATTGCCATGGACATGCAATCACTCTTTTTTCTCTTGTCACTAG 1428 0.4132 MEEDQLRQQPQGSISFPIQGMESVVATVSGYHGTERFNLIKLITNAGANYVGAMSKSITHLICWRFEGKKYNLARKFRIVIINHQWIEDCLKQGRRVPEEPYRSKSGEEVGLILLQVPLIVEASSLTKNKVLDHGSDDIGSKNQTTDISSGSSGNSVREVSYLMNKQEPTTFSSRQSMTAKRKISNCNGVATNAGPSRHRRRLVKKNIRGLSAPIHDLSSEEYLSRTDTLNTDAAASSSLSGGVSSDIILEGREGSDIVSNNQNIAINGASNATGQINDSNDLSSSRISTLCVQDALLTTEKTSVDDGFEKFTDGIQNGNEANLPISTELSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTAMGKISTCPLCKSRFESIIKYEDAARDQKIYSQTIPCGVPISDIIFLMDREQPYYGFESSQTGACVACRGREPEDLLMRCHLCHIRQIHSYCLDPPLLPWTCNHSFFSCH 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0749 475 Pfam twin BRCT domain 24 86 IPR001357 -
Prci1g0749 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 401 IPR013083 -
Prci1g0749 475 MobiDBLite consensus disorder prediction 133 156 - -
Prci1g0749 475 SMART BRCT_7 18 94 IPR001357 -
Prci1g0749 475 SUPERFAMILY RING/U-box 325 383 - -
Prci1g0749 475 Pfam Ring finger domain 331 377 IPR001841 -
Prci1g0749 475 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Prci1g0749 475 SUPERFAMILY FYVE/PHD zinc finger 416 468 IPR011011 -
Prci1g0749 475 ProSiteProfiles Zinc finger RING-type profile. 332 377 IPR001841 -
Prci1g0749 475 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Prci1g0749 475 SMART ring_2 332 376 IPR001841 -
Prci1g0749 475 PANTHER F5A8.9 PROTEIN 129 470 - -
Prci1g0749 475 MobiDBLite consensus disorder prediction 138 156 - -
Prci1g0749 475 SUPERFAMILY BRCT domain 18 104 IPR036420 -
Prci1g0749 475 Gene3D BRCT domain 19 103 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0749 Prci-Chr1 7604162 7610977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0749 58 102 Core DNA Replication Machinery Family AT4G02110 54.348 7.25e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0749 - - pcin:129291305 942.954