Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0654 ATGGATGGGACAAATAGATTATCTCCCATTAAATTGGTACAGTGTCGGATATGTCATGATGAGGATGACAACTCAAACATGGAGACTCCCTGCTCTTGTAGTGGCAGTTTGAAGTATGCACATCGAAAATGTGTCCAAAGATGGTGCAATGAGAAAGGAGATACTATCTGTGAGATTTGCCAACAGCAATTCAAGCCTGATTATACAGCACCACCTCCGCCTCCACTATTCCATTATGGCAGTTCCCCATTAAATTTTAGAGGTAACTGGGAGATTTCCAGAAGGGATCTGCAAAATCATCAGTTCATAGAAATGTTTGCTGCTAACCGTGAATTCTCAGACACTGATGAGGAATACTCGGTTCCGTCAACAGGGAGTCTGGTCTGCTTCCGCATCATTGCAATTATTCTTATTGCTCTTCTTGTTTTACGCCATACCCTTCCAATTATACTCAGCGGAGCTGGGGAATATTCATTGACTCTCTATATGTTACTGGTCATTAGAACAATTGCAATACTTCTACCTGTATGTATAATGGTTAAGGCATTTACCATTATCCAACGGCGACGATACCAGGATCATTACGCCTCTATTCTGCAACATGAGGAGAGTGAGCTGGAACAGCCTCAGTCTCGTGTCATTCATATCTTGTGA 654 0.422 MDGTNRLSPIKLVQCRICHDEDDNSNMETPCSCSGSLKYAHRKCVQRWCNEKGDTICEICQQQFKPDYTAPPPPPLFHYGSSPLNFRGNWEISRRDLQNHQFIEMFAANREFSDTDEEYSVPSTGSLVCFRIIAIILIALLVLRHTLPIILSGAGEYSLTLYMLLVIRTIAILLPVCIMVKAFTIIQRRRYQDHYASILQHEESELEQPQSRVIHIL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0654 217 Pfam Protein of unknown function (DUF3675) 66 182 IPR022143 -
Prci1g0654 217 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 8 192 IPR033275 -
Prci1g0654 217 SUPERFAMILY RING/U-box 11 65 - -
Prci1g0654 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 71 IPR013083 -
Prci1g0654 217 FunFam Zinc finger family protein 3 70 - -
Prci1g0654 217 CDD RING_CH-C4HC3_MARCH 15 61 - -
Prci1g0654 217 SMART ringv_2 14 61 IPR011016 GO:0008270
Prci1g0654 217 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Prci1g0654 217 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0654 Prci-Chr1 6635867 6641069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0654 15 61 C3H Transcription Factor Family AT2G37950 46.000 2.60e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0654 - - qsa:O6P43_005661 315.849