Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0646 ATGGCTTTACAAAACATTGGAGCGGGAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCCAAAATGATCACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACCAATGTAGTTAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCTTCTTACACAACCAAGTATTTTGGTTGTGAGCTTGGAGCCCAATCGAAATTTGATGAGAAAACGGGGACTTCTCATGTTAACGGGGCACATGAAACTTCAAAGCTTGCCGGTCTTCTGGAGAACTTCATCAAAAAATATGTTCAGTGTTACGGTTGTGGAAATCCGGAAACTGAGATCATGATCACCAAGAGTCAAATGATCCAGCTGAAATGTGCGGCCTGTGGCTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACCACCTTTATACTCAAGAATCCTCCTGAATTCAAGAAAGGGTCCAAAGACAAAAAGGCCATGAGGAGGGCTGAGAAGGAGAGACTGAAAGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAGTTGAAAAAGGAGGTTAAGAAGAAGGGTTCTTCCACTTCCAAGGAGGGAGCCACAAAATCCAAAAAGAAAGCCAATGGCTCTGATGAAGACCGTGCATCACCCACCCACAGTCAAATTCGGGAAGAAGCTCCTGTTGAGGACGAGGATGATGATGAAGATGTCCAATGGCAGACGGATACATCACTGGAGGCTGCTCGCCAGCGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTGTCGACAGACGAGCCAGAGAAGAAGCCAAAAGCAGCTAACAAGGTGAATGGTGGGCTTGAGAACGGAAACTCAAATCCCTACAGGTCTCTGGTTCAGGATGTCAAATCTTATTTGAAGAAGGGTCCATCTGCCGAGGAACTGCAGCACCAATTAGCAGGGCTCACTGCATCCTCTCAGGAAAAAATGAATGCTCTGTTTGAGGCCCTTGTTGACGGTGTTGAGAAAGGATACGCCAAAGAAGTTGTCAAGAAGAGGAGCTACCTTGCTGCTGCTGTTGCCGGGGAGGAAGGATCGCAGATGCTGTTGCTCCATGCAATGGAGGACTTCTGTTGCAAGAGCGGCTCGAATGCTTTGAAGGAGATTGCGCTGATGCTGAAGGCACTCTATGATGCTGATGTTCTGGAGGAAGAGCACATAGTGCAGTGGTATCAGAAAGGGCTGAAGGGAGACTCCAAGGACTCTAAGATATGGAAGAATGCTCAACCATTCATTGAATGGCTTCAAAATGCAGAATCCGAATCGGATGAAGAGTAA 1320 0.4644 MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETSKLAGLLENFIKKYVQCYGCGNPETEIMITKSQMIQLKCAACGFVSDVDMRDKLTTFILKNPPEFKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKEVKKKGSSTSKEGATKSKKKANGSDEDRASPTHSQIREEAPVEDEDDDEDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKKPKAANKVNGGLENGNSNPYRSLVQDVKSYLKKGPSAEELQHQLAGLTASSQEKMNALFEALVDGVEKGYAKEVVKKRSYLAAAVAGEEGSQMLLLHAMEDFCCKSGSNALKEIALMLKALYDADVLEEEHIVQWYQKGLKGDSKDSKIWKNAQPFIEWLQNAESESDEE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0646 439 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Prci1g0646 439 ProSiteProfiles W2 domain profile. 279 439 IPR003307 GO:0005515
Prci1g0646 439 Pfam eIF4-gamma/eIF5/eIF2-epsilon 361 439 IPR003307 GO:0005515
Prci1g0646 439 CDD W2_eIF5 286 437 - -
Prci1g0646 439 MobiDBLite consensus disorder prediction 149 222 - -
Prci1g0646 439 Coils Coil 167 187 - -
Prci1g0646 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 438 IPR045196 GO:0003743|GO:0006413
Prci1g0646 439 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Prci1g0646 439 Gene3D - 105 145 - -
Prci1g0646 439 SMART 542_3 347 435 IPR003307 GO:0005515
Prci1g0646 439 Gene3D - 3 104 - -
Prci1g0646 439 MobiDBLite consensus disorder prediction 149 235 - -
Prci1g0646 439 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Prci1g0646 439 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Prci1g0646 439 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Prci1g0646 439 Gene3D - 285 439 - -
Prci1g0646 439 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Prci1g0646 439 MobiDBLite consensus disorder prediction 267 288 - -
Prci1g0646 439 SUPERFAMILY ARM repeat 286 433 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0646 Prci-Chr1 6626278 6629282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0646 1 432 Eukaryotic Initiation Factors Gene Family AT1G77840 61.573 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0646 K03262 - gmx:100796346 653.669