Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0641 ATGCACAAATCCCAAACCCTAAGTTCGGTCGAGCTCTTCCACAGCGCTCTCCAATCCCCAGATTCGTCGCCTCCCTCAACGTCAGTCTCTCTCCAGCCACACCACTCTCCTCTTCCATCGTCTTTCCCCCAATCCAAACTCATCCCCAAAACACGCTTCCTGGTGGACGCATTCCGCCATGCCGGTGATTACTCTGTTGCTTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCCCTAATTGGTCTAAAGGCATTGTTTATTGCTCAAACACCACTGCTCGACTTGTCGTTGAAGTGCTTGGGGTTCCTTCGAAGTTCGTGGTCCCTTTGAGGCTCTGTGAGCCGGTTGACATTGATGGCTGTGAAGTGACACTGGTCGATGCAAATCATTGCCCTGGGGCTGTCCAATTCTTGTTTAAAATTCCGGGTGTTGATGGAAAGTGCGAGAGGTATGTTCACACGGGAGATTTTCGGTTCTCTAAGGCAATGAAGTTAGAGCCTCTACTTGCTCCATATATTGGTGCGGACGCCGTATTTTTGGACACAACCTATTGTCACCCGAAGTTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGCTTATGTAGTTGATGTAGTAGGGAGGACTGAAGGTGAAAATGATTGTTCGACTAGAAATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCGAGTTCTTGGATATGGGGAAGGCGGTGAGTTTACAGATGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTATTGGGTGAGACATGGCCATATTTTAGGCCTAATTTTGTTAGAATGATGGAGATTATGACTGAGAGAGGGTACTCTAAAGTTGTGGGTTTTGTTCCAACTGGATGGACTTGTGAAGTGAAGCGCAATAAATTTACTGTGAAGTCCAAGGATTCGTTTCAGATTCATCTTGTACCATACAGTGAGCATTCTAATTATGATGAGCTCAGGGAATATGTAAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACGGTAGGTGTAGATGTTGACAAAACTAACAGTAAACACGTGGAGAAAATGATGAAGCATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAGCAGAAATTTCTAAAGGGATTTTATTGTGCATCTAGTGAAGGGGGCTTCAAGTTTGACGAGGATGATAATGGTGTCATGAAGCCGGGGCAGAACATGGAGACAGAAGAGAAGTTATTTGGCAAGGAAGGTGATAAAAGTTTTAATCCAGATATTGTTCTAAATTTGTCTTCTACTCTTGAAGAATCTGACTTGCGGGACCCTCCATCACTAAAGGACGAGGAAACAGAGAAAATCAGTCAAGAGATGTCTTGTTATTTGCCTGCATGGGTGACTCAAGGACAAGTTTTAGAGTTGATCAGCAACGCAAGGGGCAATGTTGTTGAGGCTGTTTCTGATTTCTATGAACGTGAAACTGACTTTCATGATCAAGTATTTTCCTGTCAGACCTCTGACTCTGTTTCTTCATCCAAATGCTTATCAAATGACAACGATTTGCTCTCGAAACCACCTGTTGTTAGTAGTAAAACATGCATGAATGTTGACATTTTACCAAGTCAAGACTTCAAGTTATCCACCCTGAGACATACAGTAGCAAGTAACATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAACCAAGAAAGTAAGAGTCAACGCAAAATCAGAATCAAGTGGGCCAAAACAGTCAAGCATAACAAAATTCTTCACTAAAATCTTGCCTGACATTATCCAATCAGAAGATTTTGAAGGTAGTTATCAAAGCCCTAAAGCTGAAGACTTTCCACAATTAGATGTTGAAAAAGCGTACAAGGATGAGATTGACCATTTCATGCAGATAATAAATTGCAATGAATCATTAAAAGAATATGCTATCGCTATAATTGAGAAGACAAAAGGAGACGTGAATAAGGCATTGGATATATACTACTGTAATCCTGGCAATTTTGCTGATAATGAGAACTCTGTTCAAGTTGAGTGCAAAGTGGACAACTCTTCAGAAAAGAAATGCGTGTCACGGGAAGTGGGATCTACACCTGATATTTCTGTGCAAAGCGTATCAATGGAGAATGTAGATGCAACTCTTGTATCGCTACCACTGAAAGCATACAACCCAAAAGAACATGCATGTTGGAGAGATGGAGAGTTTGCTCCATATTTGCATCTTGCACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTTAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAATTAAGTATTGGTGGAAGTTTGATTACTGCAGCACTGGAAGAGGCATGTGGAACAACTCGAATGAAAATAAAGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTAGACAAACACAGAGATTGCTTGCTCCTCCAACACCACTTCTGATTAAAGATGTTTTCTTCGCGCTTCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAATTGTAAATCTTATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTGTTGCCTGCTCTGGCTCAAGCTGTTGTTATGAATTCATGCCCTACTCTACACCAAGATGGAACTGCAGAAAGTCTGAAGGAGAAGCTTCAGGGCATTTCAGCAGAAATTGTTGAAGCATATAACATACTCCCAAATTTGGATGTACTGATACCATCTTTAATGAACAAAGGCCCTAGTTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAGGATCACCAATGGCATTCCCCAAGTACTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATACAAATATGATGGCCAGCGGGCTCAGATTCACAAATTAAGTGATGGGTCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGATATAATTAAGGAATTCTGCAAGCCTGTTTCAGTGACTTTTATACTGGATGCAGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTCCAAGAATTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCGGTTACTGCAGAGAGCATAAAGGTGGACATTTGCCTATTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTTCCTCTCCGTGAAAGACGAAAATATCTGAAGGATTTGTTTCATGGCGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACTACTATTGAAGCGGATGATGCTTCCTTAACCTGTGAAGCCACAGTAAGTAGGATAAACTCTTTCCTAGAAGACGCAATCCATTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCTGGATATACTCCATCAAAGCGTACAGACACATGGTTAAAGGTCAAGCGAGATTATGTGGATGGTTTGAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAACCCTGAAACAGAGGAGTACCAAAGTGTATGCCGTGTGATGTCTGGGTTCTCAGATTCCTTCTACATAGAGATGAAAGAATTCTTTTCTGATGACAAAATATTGTCGAAAAAGCCACCATATTACCGAACGGCGGAGATGCCTGACAAGTGGTTCAGTCCACTACTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCACCATGCTGCCATTGGTCTGGTTCATCCTTCTCGTGGCATCTCAATCAGATTCCCCAGATTTGTTCGCAGTGTGTCGGACAGGAACCCAGAAGAATGCAGCACCGCTTCTGAAATAGCTGAATTGTTTCATTCTCAAACTCGGAAGATGGATGTTGCAGCTGACGATTAA 4188 0.4112 MHKSQTLSSVELFHSALQSPDSSPPSTSVSLQPHHSPLPSSFPQSKLIPKTRFLVDAFRHAGDYSVAYFLSHFHSDHYTGLGPNWSKGIVYCSNTTARLVVEVLGVPSKFVVPLRLCEPVDIDGCEVTLVDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKLEPLLAPYIGADAVFLDTTYCHPKFQFPSQEESVAYVVDVVGRTEGENDCSTRNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGEFTDDDSQTNIHVVGWNVLGETWPYFRPNFVRMMEIMTERGYSKVVGFVPTGWTCEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTNSKHVEKMMKHFAGLVDETANKQKFLKGFYCASSEGGFKFDEDDNGVMKPGQNMETEEKLFGKEGDKSFNPDIVLNLSSTLEESDLRDPPSLKDEETEKISQEMSCYLPAWVTQGQVLELISNARGNVVEAVSDFYERETDFHDQVFSCQTSDSVSSSKCLSNDNDLLSKPPVVSSKTCMNVDILPSQDFKLSTLRHTVASNISPAKRKRNSERKLTKKVRVNAKSESSGPKQSSITKFFTKILPDIIQSEDFEGSYQSPKAEDFPQLDVEKAYKDEIDHFMQIINCNESLKEYAIAIIEKTKGDVNKALDIYYCNPGNFADNENSVQVECKVDNSSEKKCVSREVGSTPDISVQSVSMENVDATLVSLPLKAYNPKEHACWRDGEFAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELSIGGSLITAALEEACGTTRMKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFFALHKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMNSCPTLHQDGTAESLKEKLQGISAEIVEAYNILPNLDVLIPSLMNKGPSFCASSLSMVPGIPIKPMLARITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPVSVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVTAESIKVDICLFVFDIMFANGQQLLGFPLRERRKYLKDLFHGEKLGYFEYAKETTIEADDASLTCEATVSRINSFLEDAIHSSCEGIMVKSLDVDAGYTPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSDDKILSKKPPYYRTAEMPDKWFSPLLVWEIRGAEFTVSPVHHAAIGLVHPSRGISIRFPRFVRSVSDRNPEECSTASEIAELFHSQTRKMDVAADD 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0641 1395 ProSiteProfiles ATP-dependent DNA ligase family profile. 1123 1270 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci1g0641 1395 Gene3D - 194 348 - -
Prci1g0641 1395 CDD Adenylation_DNA_ligase_I_Euk 1003 1235 - -
Prci1g0641 1395 Gene3D - 1237 1394 IPR012340 -
Prci1g0641 1395 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1036 1044 IPR016059 GO:0003909
Prci1g0641 1395 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1388 - -
Prci1g0641 1395 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0641 1395 NCBIfam ATP-dependent DNA ligase 824 1382 IPR000977 GO:0003910|GO:0005524|GO:0071897
Prci1g0641 1395 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 975 1233 - -
Prci1g0641 1395 ProSitePatterns ATP-dependent DNA ligase signature 2. 1206 1232 IPR016059 GO:0003909
Prci1g0641 1395 Pfam ATP dependent DNA ligase domain 1012 1232 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci1g0641 1395 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 994 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0641 1395 MobiDBLite consensus disorder prediction 583 610 - -
Prci1g0641 1395 CDD SNM1A-1C-like_MBL-fold 43 191 - -
Prci1g0641 1395 Gene3D DNA ligase/mRNA capping enzyme 1041 1172 - -
Prci1g0641 1395 Gene3D - 48 370 IPR036866 -
Prci1g0641 1395 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 371 IPR036866 -
Prci1g0641 1395 Pfam ATP dependent DNA ligase C terminal region 1258 1366 IPR012309 GO:0003910|GO:0006281|GO:0006310
Prci1g0641 1395 SUPERFAMILY Nucleic acid-binding proteins 1241 1385 IPR012340 -
Prci1g0641 1395 FunFam DNA ligase 1237 1394 - -
Prci1g0641 1395 MobiDBLite consensus disorder prediction 16 43 - -
Prci1g0641 1395 FunFam DNA ligase 1041 1172 - -
Prci1g0641 1395 CDD OBF_DNA_ligase_I 1241 1384 - -
Prci1g0641 1395 Gene3D - 1022 1236 - -
Prci1g0641 1395 Pfam DNA repair metallo-beta-lactamase 269 373 IPR011084 -
Prci1g0641 1395 Gene3D - 746 1014 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0641 1395 FunFam DNA ligase 194 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0641 Prci-Chr1 6549111 6562546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0641 751 1385 Core DNA Replication Machinery Family AT1G08130 39.655 1.04e-162 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0641 - - gmx:100807673 2015.35