Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0639 ATGCACAAATCCCAAACCCTAAGTTCGGTCGAGCTCTTCCACAGCGCTCTCCAATCCCCAGATTCGTCGCCTCCCTCAACGTCAGTCTCTCTCCAGCCACACCACTCTCCTCTTCCATCGTCTTTCCCCCAATCCAAACTCATCCCCAAAACACGCTTCCTGGTGGACGCATTCCGCCATGCCGGTGATTACTCTGTTGCTTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCCCTAATTGGTCTAAAGGCATTGTTTATTGCTCAAACACCACTGCTCGACTTGTCGTTGAAGTGCTTGGGGTTCCTTCGAAGTTCGTGGTCCCTTTGAGGCTCTGTGAGCCGGTTGACATTGATGGCTGTGAAGTGACACTGGTCGATGCAAATCATTGCCCTGGGGCTGTCCAATTCTTGTTTAAAATTCCGGGTGTTGATGGAAAGTGCGAGAGGTATGTTCACACGGGAGATTTTCGGTTCTCTAAGGCAATGAAGTTAGAGCCTCTACTTGCTCCATATATTGGTGCGGACGCCGTATTTTTGGACACAACCTATTGTCACCCGAAGTTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGCTTATGTAGTTGATGTAGTAGGGAGGACTGAAGGTGAAAATGATTGTTCGACTAGAAATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCGAGTTCTTGGATATGGGGAAGGCGGTGAGTTTACAGATGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTATTGGGTGAGACATGGCCATATTTTAGGCCTAATTTTGTTAGAATGATGGAGATTATGACTGAGAGAGGGTACTCTAAAGTTGTGGGTTTTGTTCCAACTGGATGGACTTGTGAAGTGAAGCGCAATAAATTTACTGTGAAGTCCAAGGATTCGTTTCAGATTCATCTTGTACCATACAGTGAGCATTCTAATTATGATGAGCTCAGGGAATATGTAAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACGGTAGGTGTAGATGTTGACAAAACTAACAGTAAACACGTGGAGAAAATGATGAAGCATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAGCAGAAATTTCTAAAGGGATTTTATTGTGCATCTAGTGAAGGGGGCTTCAAGTTTGACGAGGATGATAATGGTGTCATGAAGCCGGGGCAGAACATGGAGACAGAAGAGAAGTTATTTGGCAAGGAAGGTGATAAAAGTTTTAATCCAGATATTGTTCTAAATTTGTCTTCTACTCTTGAAGAATCTGACTTGCGGGACCCTCCATCACTAAAGGACGAGGAAACAGAGAAAATCAGTCAAGAGATGTCTTGTTATTTGCCTGCATGGGTGACTCAAGGACAAGTTTTAGAGTTGATCAGCAACGCAAGGGGCAATGTTGTTGAGGCTGTTTCTGATTTCTATGAACGTGAAACTGACTTTCATGATCAAGTATTTTCCTGTCAGACCTCTGACTCTGTTTCTTCATCCAAATGCTTATCAAATGACAACGATTTGCTCTCGAAACCACCTGTTGTTAGTAGTAAAACATGCATGAATGTTGACATTTTACCAAGTCAAGACTTCAAGTTATCCACCCTGAGACATACAGTAGCAAGTAACATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAACCAAGAAAGTAAGAGTCAACGCAAAATCAGAATCAAGTGGGCCAAAACAGTCAAGCATAACAAAATTCTTCACTAAAATCTTGCCTGACATTATCCAATCAGAAGATTTTGAAGGTAGTTATCAAAGCCCTAAAGCTGAAGACTTTCCACAATTAGATGTTGAAAAAGCGTACAAGGATGAGATTGACCATTTCATGCAGATAATAAATTGCAATGAATCATTAAAAGAATATGCTATCGCTATAATTGAGAAGACAAAAGGAGACGTGAATAAGGCATTGGATATATACTACTGTAATCCTGGCAATTTTGCTGATAATGAGAACTCTGTTCAAGTTGAGTGCAAAGTGGACAACTCTTCAGAAAAGAAATGCGTGTCACGGGAAGTGGGATCTACACCTGATATTTCTGTGCAAAGCGTATCAATGGAGAATGTAGATGCAACTCTTGTATCGCTACCACTGAAAGCATACAACCCAAAAGAACATGCATGTTGGAGAGATGGAGAGTTTGCTCCATATTTGCATCTTGCACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTTAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGTTTCTTATTGTTAAAGGTGATGTTGCTCAAGAGTGTAGACAAACACAGAGATTGCTTGCTCCTCCAACACCACTTCTGATTAAAGATGTTTTCTTCGCGCTTCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAATTGTAAATCTTATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTGTTGCCTGCTCTGGCTCAAGCTGTTGTTATGAATTCATGCCCTACTCTACACCAAGATGGAACTGCAGAAAGTCTGAAGGAGAAGCTTCAGGGCATTTCAGCAGAAATTGTTGAAGCATATAACATACTCCCAAATTTGGATGTACTGATACCATCTTTAATGAACAAAGGCCCTAGTTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAGGATCACCAATGGCATTCCCCAAGTACTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATACAAATATGATGGCCAGCGGGCTCAGATTCACAAATTAAGTGATGGGTCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGATATAATTAAGGAATTCTGCAAGCCTGTTTCAGTGACTTTTATACTGGATGCAGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTCCAAGAATTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCGGTTACTGCAGAGAGCATAAAGGTGGACATTTGCCTATTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTTCCTCTCCGTGAAAGACGAAAATATCTGAAGGATTTGTTTCATGGCGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACTACTATTGAAGCGGATGATGCTTCCTTAACCTGTGAAGCCACAGTAAGTAGGATAAACTCTTTCCTAGAAGACGCAATCCATTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCTGGATATACTCCATCAAAGCGTACAGACACATGGTTAAAGGTCAAGCGAGATTATGTGGATGGTTTGAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAACCCTGAAACAGAGGAGTACCAAAGTGTATGCCGTGTGATGTCTGGGTTCTCAGATTCCTTCTACATAGAGATGAAAGAATTCTTTTCTGATGACAAAATATTGTCGAAAAAGCCACCATATTACCGAACGGCGGAGATGCCTGACAAGTGGTTCAGTCCACTACTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCACCATGCTGCCATTGGTCTGGTTCATCCTTCTCGTGGCATCTCAATCAGATTCCCCAGATTTGTTCGCAGTGTGTCGGACAGGAACCCAGAAGAATGCAGCACCGCTTCTGAAATAGCTGAATTGTTTCATTCTCAAACTCGGAAGATGGATGTTGCAGCTGACGATTAA 4101 0.4114 MHKSQTLSSVELFHSALQSPDSSPPSTSVSLQPHHSPLPSSFPQSKLIPKTRFLVDAFRHAGDYSVAYFLSHFHSDHYTGLGPNWSKGIVYCSNTTARLVVEVLGVPSKFVVPLRLCEPVDIDGCEVTLVDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKLEPLLAPYIGADAVFLDTTYCHPKFQFPSQEESVAYVVDVVGRTEGENDCSTRNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGEFTDDDSQTNIHVVGWNVLGETWPYFRPNFVRMMEIMTERGYSKVVGFVPTGWTCEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTNSKHVEKMMKHFAGLVDETANKQKFLKGFYCASSEGGFKFDEDDNGVMKPGQNMETEEKLFGKEGDKSFNPDIVLNLSSTLEESDLRDPPSLKDEETEKISQEMSCYLPAWVTQGQVLELISNARGNVVEAVSDFYERETDFHDQVFSCQTSDSVSSSKCLSNDNDLLSKPPVVSSKTCMNVDILPSQDFKLSTLRHTVASNISPAKRKRNSERKLTKKVRVNAKSESSGPKQSSITKFFTKILPDIIQSEDFEGSYQSPKAEDFPQLDVEKAYKDEIDHFMQIINCNESLKEYAIAIIEKTKGDVNKALDIYYCNPGNFADNENSVQVECKVDNSSEKKCVSREVGSTPDISVQSVSMENVDATLVSLPLKAYNPKEHACWRDGEFAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKFLIVKGDVAQECRQTQRLLAPPTPLLIKDVFFALHKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMNSCPTLHQDGTAESLKEKLQGISAEIVEAYNILPNLDVLIPSLMNKGPSFCASSLSMVPGIPIKPMLARITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPVSVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVTAESIKVDICLFVFDIMFANGQQLLGFPLRERRKYLKDLFHGEKLGYFEYAKETTIEADDASLTCEATVSRINSFLEDAIHSSCEGIMVKSLDVDAGYTPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSDDKILSKKPPYYRTAEMPDKWFSPLLVWEIRGAEFTVSPVHHAAIGLVHPSRGISIRFPRFVRSVSDRNPEECSTASEIAELFHSQTRKMDVAADD 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0639 1366 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 829 1359 - -
Prci1g0639 1366 Gene3D - 48 370 IPR036866 -
Prci1g0639 1366 NCBIfam ATP-dependent DNA ligase 832 1353 IPR000977 GO:0003910|GO:0005524|GO:0071897
Prci1g0639 1366 Pfam ATP dependent DNA ligase domain 983 1203 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci1g0639 1366 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 965 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0639 1366 Pfam DNA ligase N terminus 829 913 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0639 1366 MobiDBLite consensus disorder prediction 583 610 - -
Prci1g0639 1366 CDD SNM1A-1C-like_MBL-fold 43 191 - -
Prci1g0639 1366 CDD Adenylation_DNA_ligase_I_Euk 974 1206 - -
Prci1g0639 1366 Gene3D - 993 1207 - -
Prci1g0639 1366 Pfam ATP dependent DNA ligase C terminal region 1229 1337 IPR012309 GO:0003910|GO:0006281|GO:0006310
Prci1g0639 1366 Gene3D - 194 348 - -
Prci1g0639 1366 Pfam DNA repair metallo-beta-lactamase 269 373 IPR011084 -
Prci1g0639 1366 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 946 1204 - -
Prci1g0639 1366 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 371 IPR036866 -
Prci1g0639 1366 FunFam DNA ligase 1208 1365 - -
Prci1g0639 1366 MobiDBLite consensus disorder prediction 16 43 - -
Prci1g0639 1366 ProSitePatterns ATP-dependent DNA ligase signature 2. 1177 1203 IPR016059 GO:0003909
Prci1g0639 1366 FunFam DNA ligase 1012 1143 - -
Prci1g0639 1366 SUPERFAMILY Nucleic acid-binding proteins 1212 1356 IPR012340 -
Prci1g0639 1366 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1007 1015 IPR016059 GO:0003909
Prci1g0639 1366 Gene3D DNA ligase/mRNA capping enzyme 1012 1143 - -
Prci1g0639 1366 Gene3D - 1208 1365 IPR012340 -
Prci1g0639 1366 ProSiteProfiles ATP-dependent DNA ligase family profile. 1094 1241 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci1g0639 1366 CDD OBF_DNA_ligase_I 1212 1355 - -
Prci1g0639 1366 Gene3D - 829 985 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0639 1366 Gene3D - 746 828 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0639 1366 FunFam DNA ligase 194 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0639 Prci-Chr1 6549111 6562546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0639 751 1356 Core DNA Replication Machinery Family AT1G08130 37.774 7.23e-148 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0639 - - gmx:100807673 1941.01