Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0638 ATGCACAAATCCCAAACCCTAAGTTCGGTCGAGCTCTTCCACAGCGCTCTCCAATCCCCAGATTCGTCGCCTCCCTCAACGTCAGTCTCTCTCCAGCCACACCACTCTCCTCTTCCATCGTCTTTCCCCCAATCCAAACTCATCCCCAAAACACGCTTCCTGGTGGACGCATTCCGCCATGCCGGTGATTACTCTGTTGCTTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCCCTAATTGGTCTAAAGGCATTGTTTATTGCTCAAACACCACTGCTCGACTTGTCGTTGAAGTGCTTGGGGTTCCTTCGAAGTTCGTGGTCCCTTTGAGGCTCTGTGAGCCGGTTGACATTGATGGCTGTGAAGTGACACTGGTCGATGCAAATCATTGCCCTGGGGCTGTCCAATTCTTGTTTAAAATTCCGGGTGTTGATGGAAAGTGCGAGAGGTATGTTCACACGGGAGATTTTCGGTTCTCTAAGGCAATGAAGTTAGAGCCTCTACTTGCTCCATATATTGGTGCGGACGCCGTATTTTTGGACACAACCTATTGTCACCCGAAGTTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGCTTATGTAGTTGATGTAGTAGGGAGGACTGAAGGTGAAAATGATTGTTCGACTAGAAATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCGAGTTCTTGGATATGGGGAAGGCGGTGAGTTTACAGATGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTATTGGGTGAGACATGGCCATATTTTAGGCCTAATTTTGTTAGAATGATGGAGATTATGACTGAGAGAGGGTACTCTAAAGTTGTGGGTTTTGTTCCAACTGGATGGACTTGTGAAGTGAAGCGCAATAAATTTACTGTGAAGTCCAAGGATTCGTTTCAGATTCATCTTGTACCATACAGTGAGCATTCTAATTATGATGAGCTCAGGGAATATGTAAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACGGTAGGTGTAGATGTTGACAAAACTAACAGTAAACACGTGGAGAAAATGATGAAGCATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAGCAGAAATTTCTAAAGGGATTTTATTGTGCATCTAGTGAAGGGGGCTTCAAGTTTGACGAGGATGATAATGGTGTCATGAAGCCGGGGCAGAACATGGAGACAGAAGAGAAGTTATTTGGCAAGGAAGGTGATAAAAGTTTTAATCCAGATATTGTTCTAAATTTGTCTTCTACTCTTGAAGAATCTGACTTGCGGGACCCTCCATCACTAAAGGACGAGGAAACAGAGAAAATCAGTCAAGAGATGTCTTGTTATTTGCCTGCATGGGTGACTCAAGGACAAGTTTTAGAGTTGATCAGCAACGCAAGGGGCAATGTTGTTGAGGCTGTTTCTGATTTCTATGAACGTGAAACTGACTTTCATGATCAAGTATTTTCCTGTCAGACCTCTGACTCTGTTTCTTCATCCAAATGCTTATCAAATGACAACGATTTGCTCTCGAAACCACCTGTTGTTAGTAGTAAAACATGCATGAATGTTGACATTTTACCAAGTCAAGACTTCAAGTTATCCACCCTGAGACATACAGTAGCAAGTAACATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAACCAAGAAAGTAAGAGTCAACGCAAAATCAGAATCAAGTGGGCCAAAACAGTCAAGCATAACAAAATTCTTCACTAAAATCTTGCCTGACATTATCCAATCAGAAGATTTTGAAGGTAGTTATCAAAGCCCTAAAGCTGAAGACTTTCCACAATTAGATGTTGAAAAAGCGTACAAGGATGAGATTGACCATTTCATGCAGATAATAAATTGCAATGAATCATTAAAAGAATATGCTATCGCTATAATTGAGAAGACAAAAGGAGACGTGAATAAGGCATTGGATATATACTACTGTAATCCTGGCAATTTTGCTGATAATGAGAACTCTGTTCAAGTTGAGTGCAAAGTGGACAACTCTTCAGAAAAGAAATGCGTGTCACGGGAAGTGGGATCTACACCTGATATTTCTGTGCAAAGCGTATCAATGGAGAATGTAGATGCAACTCTTGTATCGCTACCACTGAAAGCATACAACCCAAAAGAACATGCATGTTGGAGAGATGGAGAGTTTGCTCCATATTTGCATCTTGCACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTTAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAATTAAGTATTGGTGGAAGTTTGATTACTGCAGCACTGGAAGAGGCATGTGGAACAACTCGAATGAAAATAAAGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTAGACAAACACAGAGATTGCTTGCTCCTCCAACACCACTTCTGATTAAAGATGTTTTCTTCGCGCTTCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAATTGTAAATCTTATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTGTTGCCTGCTCTGGCTCAAGCTGTTGTTATGAATTCATGCCCTACTCTACACCAAGATGGAACTGCAGAAAGTCTGAAGGAGAAGCTTCAGGATGTACTGATACCATCTTTAATGAACAAAGGCCCTAGTTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAGGATCACCAATGGCATTCCCCAAGTACTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATACAAATATGATGGCCAGCGGGCTCAGATTCACAAATTAAGTGATGGGTCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGATATAATTAAGGAATTCTGCAAGCCTGTTTCAGTGACTTTTATACTGGATGCAGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTCCAAGAATTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCGGTTACTGCAGAGAGCATAAAGGTGGACATTTGCCTATTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTTCCTCTCCGTGAAAGACGAAAATATCTGAAGGATTTGTTTCATGGCGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACTACTATTGAAGCGGATGATGCTTCCTTAACCTGTGAAGCCACAGTAAGTAGGATAAACTCTTTCCTAGAAGACGCAATCCATTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCTGGATATACTCCATCAAAGCGTACAGACACATGGTTAAAGGTCAAGCGAGATTATGTGGATGGTTTGAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAACCCTGAAACAGAGGAGTACCAAAGTGTATGCCGTGTGATGTCTGGGTTCTCAGATTCCTTCTACATAGAGATGAAAGAATTCTTTTCTGATGACAAAATATTGTCGAAAAAGCCACCATATTACCGAACGGCGGAGATGCCTGACAAGTGGTTCAGTCCACTACTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCACCATGCTGCCATTGGTCTGGTTCATCCTTCTCGTGGCATCTCAATCAGATTCCCCAGATTTGTTCGCAGTGTGTCGGACAGGAACCCAGAAGAATGCAGCACCGCTTCTGAAATAGCTGAATTGTTTCATTCTCAAACTCGGAAGATGGATGTTGCAGCTGACGATTAA 4140 0.4118 MHKSQTLSSVELFHSALQSPDSSPPSTSVSLQPHHSPLPSSFPQSKLIPKTRFLVDAFRHAGDYSVAYFLSHFHSDHYTGLGPNWSKGIVYCSNTTARLVVEVLGVPSKFVVPLRLCEPVDIDGCEVTLVDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKLEPLLAPYIGADAVFLDTTYCHPKFQFPSQEESVAYVVDVVGRTEGENDCSTRNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGEFTDDDSQTNIHVVGWNVLGETWPYFRPNFVRMMEIMTERGYSKVVGFVPTGWTCEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTNSKHVEKMMKHFAGLVDETANKQKFLKGFYCASSEGGFKFDEDDNGVMKPGQNMETEEKLFGKEGDKSFNPDIVLNLSSTLEESDLRDPPSLKDEETEKISQEMSCYLPAWVTQGQVLELISNARGNVVEAVSDFYERETDFHDQVFSCQTSDSVSSSKCLSNDNDLLSKPPVVSSKTCMNVDILPSQDFKLSTLRHTVASNISPAKRKRNSERKLTKKVRVNAKSESSGPKQSSITKFFTKILPDIIQSEDFEGSYQSPKAEDFPQLDVEKAYKDEIDHFMQIINCNESLKEYAIAIIEKTKGDVNKALDIYYCNPGNFADNENSVQVECKVDNSSEKKCVSREVGSTPDISVQSVSMENVDATLVSLPLKAYNPKEHACWRDGEFAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELSIGGSLITAALEEACGTTRMKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFFALHKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMNSCPTLHQDGTAESLKEKLQDVLIPSLMNKGPSFCASSLSMVPGIPIKPMLARITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPVSVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVTAESIKVDICLFVFDIMFANGQQLLGFPLRERRKYLKDLFHGEKLGYFEYAKETTIEADDASLTCEATVSRINSFLEDAIHSSCEGIMVKSLDVDAGYTPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSDDKILSKKPPYYRTAEMPDKWFSPLLVWEIRGAEFTVSPVHHAAIGLVHPSRGISIRFPRFVRSVSDRNPEECSTASEIAELFHSQTRKMDVAADD 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0638 1379 CDD Adenylation_DNA_ligase_I_Euk 987 1219 - -
Prci1g0638 1379 NCBIfam ATP-dependent DNA ligase 824 1366 IPR000977 GO:0003910|GO:0005524|GO:0071897
Prci1g0638 1379 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0638 1379 Pfam DNA repair metallo-beta-lactamase 269 373 IPR011084 -
Prci1g0638 1379 Gene3D - 194 348 - -
Prci1g0638 1379 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1372 - -
Prci1g0638 1379 MobiDBLite consensus disorder prediction 583 610 - -
Prci1g0638 1379 FunFam DNA ligase 1025 1156 - -
Prci1g0638 1379 CDD SNM1A-1C-like_MBL-fold 43 191 - -
Prci1g0638 1379 ProSiteProfiles ATP-dependent DNA ligase family profile. 1107 1254 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci1g0638 1379 SUPERFAMILY Nucleic acid-binding proteins 1225 1369 IPR012340 -
Prci1g0638 1379 Gene3D - 746 998 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0638 1379 Pfam ATP dependent DNA ligase domain 996 1216 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci1g0638 1379 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 371 IPR036866 -
Prci1g0638 1379 Pfam ATP dependent DNA ligase C terminal region 1242 1350 IPR012309 GO:0003910|GO:0006281|GO:0006310
Prci1g0638 1379 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 990 1221 - -
Prci1g0638 1379 Gene3D DNA ligase/mRNA capping enzyme 1025 1156 - -
Prci1g0638 1379 Gene3D - 1006 1220 - -
Prci1g0638 1379 Gene3D - 1221 1378 IPR012340 -
Prci1g0638 1379 FunFam DNA ligase 1221 1378 - -
Prci1g0638 1379 MobiDBLite consensus disorder prediction 16 43 - -
Prci1g0638 1379 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 951 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci1g0638 1379 CDD OBF_DNA_ligase_I 1225 1368 - -
Prci1g0638 1379 Gene3D - 48 370 IPR036866 -
Prci1g0638 1379 ProSitePatterns ATP-dependent DNA ligase signature 2. 1190 1216 IPR016059 GO:0003909
Prci1g0638 1379 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1020 1028 IPR016059 GO:0003909
Prci1g0638 1379 FunFam DNA ligase 194 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0638 Prci-Chr1 6549111 6562547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0638 751 1369 Core DNA Replication Machinery Family AT1G08130 39.179 6.67e-159 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0638 - - gmx:100807673 1983.76