Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0623 ATGGGTCGAAGAAACTTAAGCATGAGGACCCTCCAGAATAGGAATGCTCGCAGGGCATTGTTCGAGAGGAGGAAGAAGGGTTTATTGAAGAAAGCTTCTGAGCTCTCCACACTCTGTGGAATCGAGGCCTGTGTGATAATCTTCCCTCCTCCTGATTCTGAAAACCCTAAAGTTGAAACATTTCCTCAAGATCCCGCACAGGTGATTCGAAATATTCAAGAGTATAATGCTAAGAGGAAATGCCCAGAGAAACTGAGGAAGAACTATGATCTCTGTGAGTTCTTCAATGATAGGAAGAATCAGGTTGAAGCTGAGACTTCCAGAATCCGTGAACAGAGATTCAAGATGCTGTATCCAACCTGGGATGACAGCTTCAACAACCTTGGAGAGGGTCAGCTAAGGATGTTTATTACGGCTTTGGATTCTAAGCTTCAAGAGTGTAATCAAACAATTGGGTTGCTGAAATCAAAGAAATCAGATATGACTGTGGTTCCAATTGGTTCCAACTCGTTGAATGATCATTGTTTGGAGATGCCTGTTACTATAATTTCTGCTGATCATCTTTCAGACGAAACCCACCTGGGTTTTATGCAGAATATGAGTGATGAATCCAACGCTGTCTCTGCTCCAACAAAACCACTTGTTGCCGATAATAACACTGACATGTTAGAATCTTACTCTCTTCAAGCTCACACACTTGGCTTTTGTTCAACCTGTGGTCACAGATTCGACAACCCAACAGAGAAGCGGCCGAGGATGTTTACTGGTTCAACCTCGGATTCTGACAATCTTCAAGAGTGTTATTATCAAATGATCGACATGTTTAAAACAAAGTCTTTGAATGATCAGTGTATGGGAACACCTATAGTTCCTCTTCAAGATATTTCAAACCAGTGCCAACCGAGTTTCTTGCAGAATACATTATCAGAAGACAACCTTGTTTGTCCTCGTACGAAGACACTTGTAGATAATACCAGTAATGGCCTGACAGAATCTTACTCTCTTCTGGATCAGATGCTTCATCACGGTTTGGAGAATATTAATTTAGACATGCTTTTGGGTTTAGAATTTGATCCGTTTGATCCCATTCTTGTTTAG 1098 0.4135 MGRRNLSMRTLQNRNARRALFERRKKGLLKKASELSTLCGIEACVIIFPPPDSENPKVETFPQDPAQVIRNIQEYNAKRKCPEKLRKNYDLCEFFNDRKNQVEAETSRIREQRFKMLYPTWDDSFNNLGEGQLRMFITALDSKLQECNQTIGLLKSKKSDMTVVPIGSNSLNDHCLEMPVTIISADHLSDETHLGFMQNMSDESNAVSAPTKPLVADNNTDMLESYSLQAHTLGFCSTCGHRFDNPTEKRPRMFTGSTSDSDNLQECYYQMIDMFKTKSLNDQCMGTPIVPLQDISNQCQPSFLQNTLSEDNLVCPRTKTLVDNTSNGLTESYSLLDQMLHHGLENINLDMLLGLEFDPFDPILV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0623 365 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Prci1g0623 365 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci1g0623 365 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci1g0623 365 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci1g0623 365 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Prci1g0623 365 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Prci1g0623 365 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Prci1g0623 365 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Prci1g0623 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 186 - -
Prci1g0623 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0623 Prci-Chr1 6373501 6375058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0623 1 220 Type I MADS-box Gene Family AT5G55690 27.586 1.01e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci1g0623 SRF-TF 4.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0623 - - pcin:129304854 746.888