Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0561 ATGGAACCACCCACCGTCGCCGCCGCTACTCCGGCAACCTACCGAGGTGTTCGCATGCGAAAGTGGGGCAAATGGGTGTCTGAAATCAGGGAGCCCGGCAAGAAGACCCGGATATGGTTAGGGAGCTATGACACGCCGGAGATGGCAGCAGCTGCATACGACGTCGCAGCTTTGCATTTCCGAGGCCAAGCGGCACGGCTCAACTTCCCGGAGCTCATCAGCTGCCTGCCTCGGCCGGCAAGCTCCCGAGCTGAGGATGTGCAGTTGGCAGCACAGCAAGCAGCTTTGAAGTTAAAGAGACCGGCCATCAGAGGGCCGTCGGAGGCAGGAGGTGACTCTACAGTGGCTCCGCCGGCGATGGTGGGGCTATCACCGAGCCAAATTCAGGCGATAAATGAGTCGCCATTGGATTCACCCAAGATGTGGATGCAGATGGCTGATGAAGCTGCTCTGATGCCAGGGTTTGATGGATTGTCCAACGAAGACGAAGACGACGACGTATCAGGGTTAAGTGAATTGGAAGAAATGCAGCATTATTATGAATCCATATGGGACTTCTAA 561 0.5597 MEPPTVAAATPATYRGVRMRKWGKWVSEIREPGKKTRIWLGSYDTPEMAAAAYDVAALHFRGQAARLNFPELISCLPRPASSRAEDVQLAAQQAALKLKRPAIRGPSEAGGDSTVAPPAMVGLSPSQIQAINESPLDSPKMWMQMADEAALMPGFDGLSNEDEDDDVSGLSELEEMQHYYESIWDF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0561 186 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Prci1g0561 186 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Prci1g0561 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 141 - -
Prci1g0561 186 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Prci1g0561 186 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Prci1g0561 186 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Prci1g0561 186 Pfam AP2 domain 14 62 IPR001471 GO:0003700|GO:0006355
Prci1g0561 186 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Prci1g0561 186 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Prci1g0561 186 FunFam Ethylene-responsive transcription factor 2 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0561 Prci-Chr1 5441358 5442141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0561 11 144 AP2-EREBP Transcription Factor Family AT1G71450 58.519 4.97e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g0561 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0561 - - cave:132183172 220.32