Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0537 ATGGAAAAGCCAGGTGAAGCTTTGGATCTGGAGTGGATTCGCCAACATCTTCTTGGTGAGTTTTCGTCCTCACAATCCTTCTTATCCAATCTGTATCCTGTAAAACTCGAGGATTATTCTTCATCGGAGGCTGATCTGAATCCGTGTGTTCCGGTGCAAAGTTTCTGTTCTTCTGTTGAAACTTTCGGTTTTGAAGATGTGGAGGTTTTAAACTCCGTCTCGGAGGTCGTGATGGAGAAGAAGCCCACATCGCCTGAGACCGAGAAGCCTGAGTGCGATGAGACGATTATGAGGCGGTACAGGGGTGTTCGGAGGAGGCCGTGGGGCAAGTTCGCTGCCGAGATCCGTGACCCGACCCGGAAAGGGACACGTGTTTGGCTGGGCACGTTTGATAGTGAGATTGACGCTGCAAAGGCTTATGACTGTGCTGCGTTCAGAATGAGGGGTCGAAGGGCAATATTGAACTTTCCTCTGGAAGCCGGAGGATCCGATCCGATGCCGAACCGGTGTGGCCGGAAAAGGAGAAGACAAAGTTCACAGGAGGAACTGTCCCAAATTTCCACTGAGATTTAA 573 0.5061 MEKPGEALDLEWIRQHLLGEFSSSQSFLSNLYPVKLEDYSSSEADLNPCVPVQSFCSSVETFGFEDVEVLNSVSEVVMEKKPTSPETEKPECDETIMRRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFRMRGRRAILNFPLEAGGSDPMPNRCGRKRRRQSSQEELSQISTEI 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0537 190 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Prci1g0537 190 PRINTS Ethylene responsive element binding protein signature 139 159 IPR001471 GO:0003700|GO:0006355
Prci1g0537 190 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677
Prci1g0537 190 Gene3D AP2/ERF domain 98 159 IPR036955 GO:0003700|GO:0006355
Prci1g0537 190 PANTHER DNA-BINDING DOMAIN 81 173 IPR044808 GO:0003700|GO:0009873
Prci1g0537 190 FunFam Ethylene-responsive transcription factor 2 98 159 - -
Prci1g0537 190 CDD AP2 107 157 IPR001471 GO:0003700|GO:0006355
Prci1g0537 190 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700|GO:0006355
Prci1g0537 190 Pfam AP2 domain 99 149 IPR001471 GO:0003700|GO:0006355
Prci1g0537 190 SMART rav1_2 99 163 IPR001471 GO:0003700|GO:0006355
Prci1g0537 190 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0537 Prci-Chr1 5135378 5136263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0537 6 185 AP2-EREBP Transcription Factor Family AT5G07580 42.708 3.60e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci1g0537 AP2 3.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0537 - - ccaj:109813158 187.578