Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0506 ATGCAGGCAAAAGTTTCCCCTAATCCACCCTCTTTTCCAGATTTTGGTTTGCAGCATGGTCAACAGAGGTGGGAAGAACCCTCTATGTCAGATTACGGTATCCGGATGGAAGCCTTGTTTAAAGAATTCAACCAAGCCTCCGGAATCCAGTCCTTGTTTCCATGTGATTCAAGCAACGGGATTAAGATCCCCAATCAAGAAAATTGTCAGATGGGCGACACATCCCGAACTGGTAAACTCCAAGATTGGGATCCCACCATGATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCAGCTTCAGGGTCTAGTGCAGTTGATTGTTGATCAGAAAGGTCAACAATTCAGACAACCTGATGAAATTATTACTCAAGAAAAGCAGCTTGTCACAGCCGATCTGACGTCGATTATAGTTCAATTGATCTCTACAGCAGGTAGTCTTCTTCCTTCTGTCAGGCTGACTACTTCAGACACCAGTCCATCTGTTGGACAGCATGGCCAGATTCCCGGGATGACTTTTCCTTCTGGACTGGATATGAGTAATAGTATCCAACCACAACGTGATATTAGAGATAAAATATCTGATCATTCCAACCAGATTGACCTGACTAATACGTGTGAAATGGAGCAAATCCACGTGGAAGAACACGAATCAAAAGACGAAGAGGATGTGGATGAGGGCGAGAACCTTCCACCAGGTTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACACTTTTGTACAATATGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACCCCGGAAGCGCTTGCAAAACCTAACAAAGAATCCGCGTCTGAACCAAAGCTCATCAAGAGATATTCCTGTCCCTACCCTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTGAAAAACCATTACAAAAGAAGTCACTGTGACAAGAGTTACATTTGCAGCAGATGCCACACGAAGAAATTTTCTGTCATGGCAGACCTTAAAACTCATGAAAAGCATTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACACCAGCAATACCCTTGGATGAATCAAAAGCACCAACTGGGCTGGCTGATATGGAAAGCAAGGAGAACAATAGCAAGGGAGGAAGCTTTGGATCAAATGCTTCTTGTGATAGTGGCATTCAAAACATCATGGATATGAAAGGCATTACTGACGATCCTATCAGTTATCTCTCATCATTGAACTATGAAACCTGTAACTTTGGTGAATTCAATGATTTTCCTCGACCCCCATTTGAAGACACTGAAGGTTCATTTCCTTTTCTCATGTCTGAATCCTTCAACTATGCTCCTAAATGTGGAGGAGAGTCAAGTTCTGACAATCTGTTGTGA 1506 0.4236 MQAKVSPNPPSFPDFGLQHGQQRWEEPSMSDYGIRMEALFKEFNQASGIQSLFPCDSSNGIKIPNQENCQMGDTSRTGKLQDWDPTMMLENLSFLEDKIHQLQGLVQLIVDQKGQQFRQPDEIITQEKQLVTADLTSIIVQLISTAGSLLPSVRLTTSDTSPSVGQHGQIPGMTFPSGLDMSNSIQPQRDIRDKISDHSNQIDLTNTCEMEQIHVEEHESKDEEDVDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESASEPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPTGLADMESKENNSKGGSFGSNASCDSGIQNIMDMKGITDDPISYLSSLNYETCNFGEFNDFPRPPFEDTEGSFPFLMSESFNYAPKCGGESSSDNLL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0506 501 Gene3D Classic Zinc Finger 236 306 - -
Prci1g0506 501 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 74 465 IPR044300 GO:0010044|GO:0010447
Prci1g0506 501 MobiDBLite consensus disorder prediction 1 22 - -
Prci1g0506 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
Prci1g0506 501 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Prci1g0506 501 MobiDBLite consensus disorder prediction 159 178 - -
Prci1g0506 501 SUPERFAMILY beta-beta-alpha zinc fingers 252 277 IPR036236 -
Prci1g0506 501 SMART c2h2final6 253 275 IPR013087 -
Prci1g0506 501 SMART c2h2final6 340 362 IPR013087 -
Prci1g0506 501 SMART c2h2final6 302 335 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0506 Prci-Chr1 4777048 4779642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0506 221 501 C2H2 Transcription Factor Family AT1G34370 69.792 6.66e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g0506 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0506 - - qsa:O6P43_004100 720.694