Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0485 ATGACATCACCCCAGTTTTCTGAGAGATCTTCAATGGCGGAGATGGAGTCATGCGTCCCACCAGGATTTAGATTTCATCCAACAGAGGAAGAACTTGTAGGATATTACCTCAAGAGAAAGATAAACTCACTCAAAATCAACCTCGATGTTATTGTCGAGCTAGATCTTTACAAAATGGAACCATGGGACATACAAGATAGATGCAAACTAGGATATGAGGAGCAGAATGAGTGGTACTTTTTCAGTCACAAGGACAAGAAGTATCCGACAGGAACGAGAACGAATAGAGCAACAGCAGCAGGATTCTGGAAAGCGACAGGGAGGGATAAGGCAGTGATGTCGAAGAACAAGATCATTGGTATGAGGAAGACCCTTGTCTTCTACCAGGGTCGTGCCCCTAATGGCCGGAAATCTGACTGGATTATGCATGAATATCGCCTTCAATCTTCTGACCATGCCCCTCCTCAGGCAAAAGGATGGGTAGTGTGCAGAGCATTCAAAAAGCCAAGTCCTAGTCATGTGAGGGCAGGTTTTGAAGCACAGTGCTATCTCAGAGACCAGATCAGCCATGGAAGGCCTTTGATGATCTCTTCATTTTCAGAGATTCTGAATCAAACCCATCCTTTGCTGACGGCTCATCCAAATAATAACAATAACTCTCAAGGCATATGCCTAAGTCCCCATGATCATCATCATCACCAGCAACCTTTCATCAGTTTGGATCAGCTGATGCAGAACCAACAACTTGTTGATCTCCCTCAACTAGATAGCCCTAGTGCTGCCTCTCTCACACCAGCTAGTTTGGGAATAGGACAAAACAACCTTAATATTGGGGAAGAATATTACAGTGATGACGTGGAAAGCTTGGACAACCTGTTTGCATCGAATCTGACAGATACAACTTCGTCTGCTGCTGCTTTCTTTGGACACTCGAACTTGCCCATGATGATGATACCTCATAACAACGAATTCTAA 975 0.4431 MTSPQFSERSSMAEMESCVPPGFRFHPTEEELVGYYLKRKINSLKINLDVIVELDLYKMEPWDIQDRCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNKIIGMRKTLVFYQGRAPNGRKSDWIMHEYRLQSSDHAPPQAKGWVVCRAFKKPSPSHVRAGFEAQCYLRDQISHGRPLMISSFSEILNQTHPLLTAHPNNNNNSQGICLSPHDHHHHQQPFISLDQLMQNQQLVDLPQLDSPSAASLTPASLGIGQNNLNIGEEYYSDDVESLDNLFASNLTDTTSSAAAFFGHSNLPMMMIPHNNEF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0485 324 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Prci1g0485 324 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Prci1g0485 324 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Prci1g0485 324 SUPERFAMILY NAC domain 9 168 IPR036093 GO:0003677|GO:0006355
Prci1g0485 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 232 - -
Prci1g0485 324 FunFam Nac domain-containing protein 86 28 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0485 Prci-Chr1 4552709 4558135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0485 15 273 NAC Transcription Factor Family AT1G71930 62.162 6.33e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g0485 NAM 4.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0485 - - gmx:100811057 380.178